Analysis of interatomic Contacts of Structural Units in PDB entry:
5LNB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LNB entry

There is 1 chain in PDB entry 5LNB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 22MET 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5LNB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
40 45Right-handed alpha
Helix 2
AA2
B
46 48Right-handed 310
Helix 3
AA3
B
54 72Right-handed alpha
Helix 4
AA4
B
76 78Right-handed 310
Helix 5
AA5
B
85 92Right-handed alpha
Helix 6
AA6
B
97 103Right-handed alpha
Helix 7
AA7
B
110 114Right-handed 310
Helix 8
AA8
B
134 141Right-handed alpha
Helix 9
AA9
B
175 195Right-handed alpha
Helix 10
AB1
B
199 201Right-handed 310
Helix 11
AB2
B
215 217Right-handed 310
Helix 12
AB3
B
218 233Right-handed alpha
Helix 13
AB4
B
233 243Right-handed alpha
Helix 14
AB5
B
248 260Right-handed alpha
Helix 15
AB6
B
261 266Right-handed alpha
Helix 16
AB7
B
267 290Right-handed alpha
Helix 17
AB8
B
292 299Right-handed alpha
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There are 2 sheets in PDB entry 5LNB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
36 39anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 82first strand
Strand 2
B
116 123parallel
Strand 3
B
126 133anti-parallel
Strand 4
B
163 168anti-parallel
Strand 5
B
203 207parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il