Analysis of interatomic Contacts of Structural Units in PDB entry:
5LNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LNI entry

There is 1 chain in PDB entry 5LNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5LNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
35 48Right-handed alpha
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
75 81Right-handed alpha
Helix 5
AA5
A
82 92Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
A
111 115Right-handed 310
Helix 8
AA8
A
149 171Right-handed alpha
Helix 9
AA9
A
183 190Right-handed alpha
Helix 10
AB1
A
203 220Right-handed alpha
Helix 11
AB2
A
240 258Right-handed alpha
Helix 12
AB3
A
283 295Right-handed alpha
Helix 13
AB4
A
306 316Right-handed alpha
Helix 14
AB5
A
325 331Right-handed alpha
Helix 15
AB6
A
333 343Right-handed alpha
Helix 16
AB7
A
346 351Right-handed 310
Helix 17
AB8
A
352 360Right-handed alpha
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There are 3 sheets in PDB entry 5LNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
52 59parallel
Strand 3
A
95 101parallel
Strand 4
A
174 179parallel
Strand 5
A
228 235parallel
Strand 6
A
262 267parallel
Strand 7
A
298 300parallel
Strand 8
A
321 323parallel
Strand 9
A
19 21parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
146 147parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il