Analysis of interatomic Contacts of Structural Units in PDB entry:
5LNL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LNL entry

There are 9 chains in PDB entry 5LNL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1607	ALA 1743
B	MET 1607	ASP 1744
C	MET 1607	ASP 1744
D	MET 1607	LYS 1741
E	MET 1607	ALA 1743
F	MET 1607	ASP 1744
G	MET 1607	ASP 1744
H	MET 1607	ASP 1744
I	MET 1607	ASP 1744

There are 27 helices in PDB entry 5LNL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1650	1658	Right-handed alpha
Helix 2	AA2	A	1665	1670	Right-handed alpha
Helix 3	AA3	A	1678	1688	Right-handed alpha
Helix 4	AA4	B	1650	1658	Right-handed alpha
Helix 5	AA5	B	1665	1670	Right-handed alpha
Helix 6	AA6	B	1678	1688	Right-handed alpha
Helix 7	AA7	C	1650	1658	Right-handed alpha
Helix 8	AA8	C	1665	1670	Right-handed alpha
Helix 9	AA9	C	1678	1688	Right-handed alpha
Helix 10	AB1	D	1650	1658	Right-handed alpha
Helix 11	AB2	D	1665	1670	Right-handed alpha
Helix 12	AB3	D	1678	1688	Right-handed alpha
Helix 13	AB4	E	1650	1658	Right-handed alpha
Helix 14	AB5	E	1665	1670	Right-handed alpha
Helix 15	AB6	E	1678	1688	Right-handed alpha
Helix 16	AB7	F	1650	1658	Right-handed alpha
Helix 17	AB8	F	1665	1670	Right-handed alpha
Helix 18	AB9	F	1678	1688	Right-handed alpha
Helix 19	AC1	G	1650	1658	Right-handed alpha
Helix 20	AC2	G	1665	1670	Right-handed alpha
Helix 21	AC3	G	1678	1688	Right-handed alpha
Helix 22	AC4	H	1650	1658	Right-handed alpha
Helix 23	AC5	H	1665	1670	Right-handed alpha
Helix 24	AC6	H	1678	1688	Right-handed alpha
Helix 25	AC7	I	1650	1658	Right-handed alpha
Helix 26	AC8	I	1665	1670	Right-handed alpha
Helix 27	AC9	I	1678	1688	Right-handed alpha

There are 27 sheets in PDB entry 5LNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1608	1611	first strand
Strand 2	B	1631	1636	parallel
Strand 3	B	1617	1622	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1618	1622	first strand
Strand 2	A	1631	1635	anti-parallel
Strand 3	C	1608	1611	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1642	1644	first strand
Strand 2	A	1647	1649	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1705	1709	first strand
Strand 2	A	1690	1694	anti-parallel
Strand 3	B	1713	1716	parallel
Strand 4	C	1734	1740	parallel
Strand 5	C	1722	1728	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1722	1728	first strand
Strand 2	B	1734	1740	anti-parallel
Strand 3	A	1713	1718	parallel
Strand 4	C	1690	1694	parallel
Strand 5	C	1705	1709	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1722	1728	first strand
Strand 2	A	1734	1740	anti-parallel
Strand 3	C	1713	1718	parallel
Strand 4	B	1690	1694	parallel
Strand 5	B	1705	1709	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1608	1611	first strand
Strand 2	C	1631	1635	parallel
Strand 3	C	1618	1622	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1642	1644	first strand
Strand 2	B	1647	1649	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1642	1644	first strand
Strand 2	C	1647	1649	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1608	1611	first strand
Strand 2	E	1631	1635	parallel
Strand 3	E	1618	1622	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1618	1622	first strand
Strand 2	D	1631	1635	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1642	1644	first strand
Strand 2	D	1647	1649	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1704	1709	first strand
Strand 2	D	1690	1695	anti-parallel
Strand 3	E	1713	1716	parallel
Strand 4	F	1734	1740	parallel
Strand 5	F	1722	1728	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1722	1728	first strand
Strand 2	E	1734	1740	anti-parallel
Strand 3	D	1713	1716	parallel
Strand 4	F	1690	1694	parallel
Strand 5	F	1705	1709	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1722	1728	first strand
Strand 2	D	1734	1740	anti-parallel
Strand 3	F	1713	1718	parallel
Strand 4	E	1690	1694	parallel
Strand 5	E	1705	1709	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1608	1611	first strand
Strand 2	F	1631	1635	parallel
Strand 3	F	1618	1622	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1642	1644	first strand
Strand 2	E	1647	1649	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1642	1644	first strand
Strand 2	F	1647	1649	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1608	1611	first strand
Strand 2	H	1631	1636	parallel
Strand 3	H	1617	1622	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1617	1622	first strand
Strand 2	G	1631	1636	anti-parallel
Strand 3	I	1608	1611	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1642	1644	first strand
Strand 2	G	1647	1649	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1705	1709	first strand
Strand 2	G	1690	1694	anti-parallel
Strand 3	H	1713	1718	parallel
Strand 4	I	1734	1740	parallel
Strand 5	I	1722	1728	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1722	1728	first strand
Strand 2	H	1734	1740	anti-parallel
Strand 3	G	1713	1718	parallel
Strand 4	I	1690	1694	parallel
Strand 5	I	1705	1709	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1722	1728	first strand
Strand 2	G	1734	1740	anti-parallel
Strand 3	I	1713	1718	parallel
Strand 4	H	1690	1694	parallel
Strand 5	H	1705	1709	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1608	1611	first strand
Strand 2	I	1631	1636	parallel
Strand 3	I	1617	1622	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1642	1644	first strand
Strand 2	H	1647	1649	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1642	1644	first strand
Strand 2	I	1647	1649	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LNL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LNL