Analysis of interatomic Contacts of Structural Units in PDB entry:
5LNQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LNQ entry

There are 4 chains in PDB entry 5LNQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12ILE 441
B
 ALA 12ILE 441
C
 ALA 12ILE 441
D
 ALA 12ILE 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 5LNQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 64Right-handed alpha
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
82 87Right-handed alpha
Helix 4
AA4
A
91 98Right-handed alpha
Helix 5
AA5
A
121 123Right-handed 310
Helix 6
AA6
A
124 139Right-handed alpha
Helix 7
AA7
A
157 166Right-handed alpha
Helix 8
AA8
A
167 169Right-handed 310
Helix 9
AA9
A
170 175Right-handed alpha
Helix 10
AB1
A
176 178Right-handed 310
Helix 11
AB2
A
180 196Right-handed alpha
Helix 12
AB3
A
200 217Right-handed alpha
Helix 13
AB4
A
229 234Right-handed alpha
Helix 14
AB5
A
249 253Right-handed 310
Helix 15
AB6
A
254 258Right-handed 310
Helix 16
AB7
A
272 280Right-handed alpha
Helix 17
AB8
A
311 326Right-handed alpha
Helix 18
AB9
A
328 332Right-handed 310
Helix 19
AC1
A
341 352Right-handed alpha
Helix 20
AC2
A
359 367Right-handed alpha
Helix 21
AC3
A
381 386Right-handed alpha
Helix 22
AC4
A
389 391Right-handed 310
Helix 23
AC5
A
392 406Right-handed alpha
Helix 24
AC6
A
409 413Right-handed 310
Helix 25
AC7
B
48 64Right-handed alpha
Helix 26
AC8
B
69 73Right-handed 310
Helix 27
AC9
B
82 87Right-handed alpha
Helix 28
AD1
B
91 98Right-handed alpha
Helix 29
AD2
B
121 123Right-handed 310
Helix 30
AD3
B
124 139Right-handed alpha
Helix 31
AD4
B
157 166Right-handed alpha
Helix 32
AD5
B
167 169Right-handed 310
Helix 33
AD6
B
170 175Right-handed alpha
Helix 34
AD7
B
176 178Right-handed 310
Helix 35
AD8
B
180 196Right-handed alpha
Helix 36
AD9
B
200 217Right-handed alpha
Helix 37
AE1
B
229 234Right-handed alpha
Helix 38
AE2
B
249 253Right-handed 310
Helix 39
AE3
B
254 258Right-handed 310
Helix 40
AE4
B
272 280Right-handed alpha
Helix 41
AE5
B
311 325Right-handed alpha
Helix 42
AE6
B
328 332Right-handed 310
Helix 43
AE7
B
341 352Right-handed alpha
Helix 44
AE8
B
359 367Right-handed alpha
Helix 45
AE9
B
381 386Right-handed alpha
Helix 46
AF1
B
389 391Right-handed 310
Helix 47
AF2
B
392 406Right-handed alpha
Helix 48
AF3
B
409 413Right-handed 310
Helix 49
AF4
C
48 64Right-handed alpha
Helix 50
AF5
C
69 73Right-handed 310
Helix 51
AF6
C
82 87Right-handed alpha
Helix 52
AF7
C
91 98Right-handed alpha
Helix 53
AF8
C
121 123Right-handed 310
Helix 54
AF9
C
124 139Right-handed alpha
Helix 55
AG1
C
157 166Right-handed alpha
Helix 56
AG2
C
167 169Right-handed 310
Helix 57
AG3
C
170 175Right-handed alpha
Helix 58
AG4
C
176 178Right-handed 310
Helix 59
AG5
C
180 196Right-handed alpha
Helix 60
AG6
C
200 216Right-handed alpha
Helix 61
AG7
C
229 234Right-handed alpha
Helix 62
AG8
C
249 253Right-handed 310
Helix 63
AG9
C
254 258Right-handed 310
Helix 64
AH1
C
273 280Right-handed alpha
Helix 65
AH2
C
311 326Right-handed alpha
Helix 66
AH3
C
328 332Right-handed 310
Helix 67
AH4
C
341 352Right-handed alpha
Helix 68
AH5
C
359 367Right-handed alpha
Helix 69
AH6
C
381 386Right-handed alpha
Helix 70
AH7
C
389 391Right-handed 310
Helix 71
AH8
C
392 406Right-handed alpha
Helix 72
AH9
C
409 413Right-handed 310
Helix 73
AI1
D
48 64Right-handed alpha
Helix 74
AI2
D
69 73Right-handed 310
Helix 75
AI3
D
82 87Right-handed alpha
Helix 76
AI4
D
91 98Right-handed alpha
Helix 77
AI5
D
121 123Right-handed 310
Helix 78
AI6
D
124 139Right-handed alpha
Helix 79
AI7
D
157 166Right-handed alpha
Helix 80
AI8
D
167 169Right-handed 310
Helix 81
AI9
D
170 175Right-handed alpha
Helix 82
AJ1
D
176 178Right-handed 310
Helix 83
AJ2
D
180 196Right-handed alpha
Helix 84
AJ3
D
200 217Right-handed alpha
Helix 85
AJ4
D
229 234Right-handed alpha
Helix 86
AJ5
D
249 253Right-handed 310
Helix 87
AJ6
D
254 258Right-handed 310
Helix 88
AJ7
D
272 280Right-handed alpha
Helix 89
AJ8
D
311 326Right-handed alpha
Helix 90
AJ9
D
328 332Right-handed 310
Helix 91
AK1
D
341 352Right-handed alpha
Helix 92
AK2
D
359 367Right-handed alpha
Helix 93
AK3
D
381 386Right-handed alpha
Helix 94
AK4
D
389 391Right-handed 310
Helix 95
AK5
D
392 406Right-handed alpha
Helix 96
AK6
D
409 413Right-handed 310
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There are 2 sheets in PDB entry 5LNQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 337first strand
Strand 2
A
420 427parallel
Strand 3
A
432 440anti-parallel
Strand 4
A
289 298anti-parallel
Strand 5
A
16 22anti-parallel
Strand 6
A
264 271anti-parallel
Strand 7
A
144 151anti-parallel
Strand 8
A
75 79parallel
Strand 9
A
116 120parallel
Strand 10
B
116 120anti-parallel
Strand 11
B
75 79parallel
Strand 12
B
144 152parallel
Strand 13
B
263 271anti-parallel
Strand 14
B
15 22anti-parallel
Strand 15
B
289 298anti-parallel
Strand 16
B
432 440anti-parallel
Strand 17
B
420 427anti-parallel
Strand 18
B
334 337parallel
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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
334 337first strand
Strand 2
C
420 427parallel
Strand 3
C
432 440anti-parallel
Strand 4
C
289 298anti-parallel
Strand 5
C
15 22anti-parallel
Strand 6
C
264 272anti-parallel
Strand 7
C
144 151anti-parallel
Strand 8
C
75 79parallel
Strand 9
C
116 120parallel
Strand 10
D
116 120anti-parallel
Strand 11
D
75 79parallel
Strand 12
D
144 151parallel
Strand 13
D
264 271anti-parallel
Strand 14
D
15 22anti-parallel
Strand 15
D
289 298anti-parallel
Strand 16
D
432 440anti-parallel
Strand 17
D
420 427anti-parallel
Strand 18
D
334 337parallel
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