Analysis of interatomic Contacts of Structural Units in PDB entry:
5LNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LNR entry

There are 4 chains in PDB entry 5LNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22LEU 288
B
 PRO 23LEU 288
C
 SER 22LEU 288
D
 PRO 23LEU 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 5LNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
33 35Right-handed 310
Helix 3
AA3
A
44 54Right-handed alpha
Helix 4
AA4
A
65 72Right-handed alpha
Helix 5
AA5
A
80 91Right-handed alpha
Helix 6
AA6
A
103 114Right-handed alpha
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
148 159Right-handed alpha
Helix 9
AA9
A
174 194Right-handed alpha
Helix 10
AB1
A
195 197Right-handed 310
Helix 11
AB2
A
198 207Right-handed alpha
Helix 12
AB3
A
209 220Right-handed alpha
Helix 13
AB4
A
234 245Right-handed alpha
Helix 14
AB5
A
253 258Right-handed alpha
Helix 15
AB6
A
260 274Right-handed alpha
Helix 16
AB7
A
277 286Right-handed alpha
Helix 17
AB8
B
24 33Right-handed alpha
Helix 18
AB9
B
44 54Right-handed alpha
Helix 19
AC1
B
65 72Right-handed alpha
Helix 20
AC2
B
80 91Right-handed alpha
Helix 21
AC3
B
103 114Right-handed alpha
Helix 22
AC4
B
134 138Right-handed 310
Helix 23
AC5
B
148 158Right-handed alpha
Helix 24
AC6
B
174 193Right-handed alpha
Helix 25
AC7
B
195 197Right-handed 310
Helix 26
AC8
B
198 207Right-handed alpha
Helix 27
AC9
B
209 220Right-handed alpha
Helix 28
AD1
B
234 244Right-handed alpha
Helix 29
AD2
B
252 258Right-handed 310
Helix 30
AD3
B
260 274Right-handed alpha
Helix 31
AD4
B
277 286Right-handed alpha
Helix 32
AD5
C
23 33Right-handed alpha
Helix 33
AD6
C
44 55Right-handed alpha
Helix 34
AD7
C
65 72Right-handed alpha
Helix 35
AD8
C
80 91Right-handed alpha
Helix 36
AD9
C
103 114Right-handed alpha
Helix 37
AE1
C
134 138Right-handed 310
Helix 38
AE2
C
148 158Right-handed alpha
Helix 39
AE3
C
174 194Right-handed alpha
Helix 40
AE4
C
195 197Right-handed 310
Helix 41
AE5
C
198 207Right-handed alpha
Helix 42
AE6
C
209 220Right-handed alpha
Helix 43
AE7
C
234 245Right-handed alpha
Helix 44
AE8
C
252 256Right-handed 310
Helix 45
AE9
C
260 274Right-handed alpha
Helix 46
AF1
C
277 286Right-handed alpha
Helix 47
AF2
D
24 32Right-handed alpha
Helix 48
AF3
D
33 35Right-handed 310
Helix 49
AF4
D
44 55Right-handed alpha
Helix 50
AF5
D
65 72Right-handed alpha
Helix 51
AF6
D
80 89Right-handed alpha
Helix 52
AF7
D
103 114Right-handed alpha
Helix 53
AF8
D
134 138Right-handed 310
Helix 54
AF9
D
148 159Right-handed alpha
Helix 55
AG1
D
174 194Right-handed alpha
Helix 56
AG2
D
195 197Right-handed 310
Helix 57
AG3
D
198 207Right-handed alpha
Helix 58
AG4
D
209 220Right-handed alpha
Helix 59
AG5
D
234 245Right-handed alpha
Helix 60
AG6
D
252 256Right-handed 310
Helix 61
AG7
D
260 274Right-handed alpha
Helix 62
AG8
D
277 286Right-handed alpha
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There are 4 sheets in PDB entry 5LNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
162 165parallel
Strand 3
A
142 146parallel
Strand 4
A
117 121parallel
Strand 5
A
95 100parallel
Strand 6
A
58 61parallel
Strand 7
A
37 42parallel
Strand 8
A
248 251parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
162 165parallel
Strand 3
B
142 146parallel
Strand 4
B
117 121parallel
Strand 5
B
95 100parallel
Strand 6
B
58 61parallel
Strand 7
B
37 42parallel
Strand 8
B
248 251parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
225 227first strand
Strand 2
C
162 165parallel
Strand 3
C
142 146parallel
Strand 4
C
117 121parallel
Strand 5
C
95 100parallel
Strand 6
C
58 61parallel
Strand 7
C
37 42parallel
Strand 8
C
248 251parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
225 227first strand
Strand 2
D
162 165parallel
Strand 3
D
142 146parallel
Strand 4
D
117 121parallel
Strand 5
D
95 100parallel
Strand 6
D
58 61parallel
Strand 7
D
37 42parallel
Strand 8
D
248 251parallel
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