Analysis of interatomic Contacts of Structural Units in PDB entry:
5LNX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LNX entry

There are 8 chains in PDB entry 5LNX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 6	GLY 376
B	GLN 5	GLY 377
C	VAL 8	GLY 376
D	MET 1	GLY 376
E	GLU 6	GLY 376
F	MET 1	GLY 376
G	VAL 8	GLY 376
H	VAL 3	GLY 376

There are126 helices in PDB entry 5LNX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	36	46	Right-handed alpha
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	64	78	Right-handed alpha
Helix 5	AA5	A	78	91	Right-handed alpha
Helix 6	AA6	A	93	100	Right-handed alpha
Helix 7	AA7	A	101	115	Right-handed alpha
Helix 8	AA8	A	131	135	Right-handed 310
Helix 9	AA9	A	228	266	Right-handed alpha
Helix 10	AB1	A	276	305	Right-handed alpha
Helix 11	AB2	A	310	327	Right-handed alpha
Helix 12	AB3	A	335	341	Right-handed 310
Helix 13	AB4	A	346	356	Right-handed alpha
Helix 14	AB5	A	362	376	Right-handed alpha
Helix 15	AB6	B	6	33	Right-handed alpha
Helix 16	AB7	B	36	46	Right-handed alpha
Helix 17	AB8	B	54	58	Right-handed 310
Helix 18	AB9	B	63	78	Right-handed alpha
Helix 19	AC1	B	78	91	Right-handed alpha
Helix 20	AC2	B	93	100	Right-handed alpha
Helix 21	AC3	B	101	115	Right-handed alpha
Helix 22	AC4	B	131	135	Right-handed 310
Helix 23	AC5	B	171	177	Right-handed 310
Helix 24	AC6	B	228	266	Right-handed alpha
Helix 25	AC7	B	276	306	Right-handed alpha
Helix 26	AC8	B	310	327	Right-handed alpha
Helix 27	AC9	B	328	336	Right-handed alpha
Helix 28	AD1	B	337	341	Right-handed 310
Helix 29	AD2	B	346	356	Right-handed alpha
Helix 30	AD3	B	362	376	Right-handed alpha
Helix 31	AD4	C	11	33	Right-handed alpha
Helix 32	AD5	C	36	46	Right-handed alpha
Helix 33	AD6	C	54	58	Right-handed 310
Helix 34	AD7	C	63	78	Right-handed alpha
Helix 35	AD8	C	79	91	Right-handed alpha
Helix 36	AD9	C	93	100	Right-handed alpha
Helix 37	AE1	C	103	115	Right-handed alpha
Helix 38	AE2	C	131	135	Right-handed 310
Helix 39	AE3	C	171	178	Right-handed 310
Helix 40	AE4	C	228	266	Right-handed alpha
Helix 41	AE5	C	276	306	Right-handed alpha
Helix 42	AE6	C	310	327	Right-handed alpha
Helix 43	AE7	C	335	341	Right-handed 310
Helix 44	AE8	C	346	354	Right-handed alpha
Helix 45	AE9	C	355	358	Right-handed 310
Helix 46	AF1	C	362	376	Right-handed alpha
Helix 47	AF2	D	8	33	Right-handed alpha
Helix 48	AF3	D	36	46	Right-handed alpha
Helix 49	AF4	D	54	58	Right-handed 310
Helix 50	AF5	D	63	78	Right-handed alpha
Helix 51	AF6	D	78	91	Right-handed alpha
Helix 52	AF7	D	93	100	Right-handed alpha
Helix 53	AF8	D	101	115	Right-handed alpha
Helix 54	AF9	D	131	135	Right-handed 310
Helix 55	AG1	D	174	177	Right-handed 310
Helix 56	AG2	D	218	220	Right-handed 310
Helix 57	AG3	D	228	266	Right-handed alpha
Helix 58	AG4	D	276	306	Right-handed alpha
Helix 59	AG5	D	310	327	Right-handed alpha
Helix 60	AG6	D	330	336	Right-handed alpha
Helix 61	AG7	D	337	341	Right-handed 310
Helix 62	AG8	D	346	356	Right-handed alpha
Helix 63	AG9	D	362	376	Right-handed alpha
Helix 64	AH1	E	7	33	Right-handed alpha
Helix 65	AH2	E	36	46	Right-handed alpha
Helix 66	AH3	E	54	58	Right-handed 310
Helix 67	AH4	E	63	78	Right-handed alpha
Helix 68	AH5	E	78	91	Right-handed alpha
Helix 69	AH6	E	93	100	Right-handed alpha
Helix 70	AH7	E	101	115	Right-handed alpha
Helix 71	AH8	E	131	135	Right-handed 310
Helix 72	AH9	E	228	266	Right-handed alpha
Helix 73	AI1	E	276	306	Right-handed alpha
Helix 74	AI2	E	310	326	Right-handed alpha
Helix 75	AI3	E	330	336	Right-handed alpha
Helix 76	AI4	E	337	341	Right-handed 310
Helix 77	AI5	E	346	356	Right-handed alpha
Helix 78	AI6	E	362	376	Right-handed alpha
Helix 79	AI7	F	4	33	Right-handed alpha
Helix 80	AI8	F	36	46	Right-handed alpha
Helix 81	AI9	F	54	58	Right-handed 310
Helix 82	AJ1	F	63	78	Right-handed alpha
Helix 83	AJ2	F	78	91	Right-handed alpha
Helix 84	AJ3	F	93	100	Right-handed alpha
Helix 85	AJ4	F	101	115	Right-handed alpha
Helix 86	AJ5	F	131	135	Right-handed 310
Helix 87	AJ6	F	218	222	Right-handed 310
Helix 88	AJ7	F	235	266	Right-handed alpha
Helix 89	AJ8	F	276	306	Right-handed alpha
Helix 90	AJ9	F	310	326	Right-handed alpha
Helix 91	AK1	F	330	336	Right-handed alpha
Helix 92	AK2	F	337	341	Right-handed 310
Helix 93	AK3	F	346	356	Right-handed alpha
Helix 94	AK4	F	362	376	Right-handed alpha
Helix 95	AK5	G	9	33	Right-handed alpha
Helix 96	AK6	G	36	46	Right-handed alpha
Helix 97	AK7	G	54	58	Right-handed 310
Helix 98	AK8	G	63	78	Right-handed alpha
Helix 99	AK9	G	78	89	Right-handed alpha
Helix 100	AL1	G	93	100	Right-handed alpha
Helix 101	AL2	G	101	115	Right-handed alpha
Helix 102	AL3	G	131	135	Right-handed 310
Helix 103	AL4	G	171	177	Right-handed 310
Helix 104	AL5	G	230	266	Right-handed alpha
Helix 105	AL6	G	276	306	Right-handed alpha
Helix 106	AL7	G	310	327	Right-handed alpha
Helix 107	AL8	G	328	336	Right-handed alpha
Helix 108	AL9	G	337	341	Right-handed 310
Helix 109	AM1	G	346	356	Right-handed alpha
Helix 110	AM2	G	362	376	Right-handed alpha
Helix 111	AM3	H	7	33	Right-handed alpha
Helix 112	AM4	H	36	46	Right-handed alpha
Helix 113	AM5	H	54	58	Right-handed 310
Helix 114	AM6	H	63	78	Right-handed alpha
Helix 115	AM7	H	78	91	Right-handed alpha
Helix 116	AM8	H	93	100	Right-handed alpha
Helix 117	AM9	H	101	115	Right-handed alpha
Helix 118	AN1	H	131	135	Right-handed 310
Helix 119	AN2	H	171	177	Right-handed 310
Helix 120	AN3	H	228	266	Right-handed alpha
Helix 121	AN4	H	276	306	Right-handed alpha
Helix 122	AN5	H	310	327	Right-handed alpha
Helix 123	AN6	H	330	336	Right-handed alpha
Helix 124	AN7	H	337	341	Right-handed 310
Helix 125	AN8	H	346	356	Right-handed alpha
Helix 126	AN9	H	362	376	Right-handed alpha

There are 24 sheets in PDB entry 5LNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	122	first strand
Strand 2	A	163	169	parallel
Strand 3	A	179	185	anti-parallel
Strand 4	A	222	223	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	145	156	anti-parallel
Strand 3	A	207	218	anti-parallel
Strand 4	A	191	196	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	271	272	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	163	169	parallel
Strand 3	B	179	185	anti-parallel
Strand 4	B	222	223	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	145	156	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	191	196	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	271	272	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	122	first strand
Strand 2	C	163	167	parallel
Strand 3	C	181	185	anti-parallel
Strand 4	C	222	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	141	first strand
Strand 2	C	146	156	anti-parallel
Strand 3	C	207	217	anti-parallel
Strand 4	C	191	196	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	271	272	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	120	first strand
Strand 2	D	163	169	parallel
Strand 3	D	179	185	anti-parallel
Strand 4	D	222	223	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	142	first strand
Strand 2	D	145	156	anti-parallel
Strand 3	D	207	217	anti-parallel
Strand 4	D	191	196	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	268	first strand
Strand 2	D	271	272	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	142	first strand
Strand 2	E	145	156	anti-parallel
Strand 3	E	207	218	anti-parallel
Strand 4	E	191	196	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	169	first strand
Strand 2	E	179	185	anti-parallel
Strand 3	E	222	223	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	268	first strand
Strand 2	E	271	272	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	122	first strand
Strand 2	F	163	169	parallel
Strand 3	F	179	185	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	142	first strand
Strand 2	F	145	156	anti-parallel
Strand 3	F	207	212	anti-parallel
Strand 4	F	191	196	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	267	268	first strand
Strand 2	F	271	272	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	142	first strand
Strand 2	G	145	156	anti-parallel
Strand 3	G	207	218	anti-parallel
Strand 4	G	191	196	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	169	first strand
Strand 2	G	179	185	anti-parallel
Strand 3	G	222	223	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	267	268	first strand
Strand 2	G	271	272	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	122	first strand
Strand 2	H	163	169	parallel
Strand 3	H	179	185	anti-parallel
Strand 4	H	222	223	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	142	first strand
Strand 2	H	145	156	anti-parallel
Strand 3	H	207	218	anti-parallel
Strand 4	H	191	196	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	267	268	first strand
Strand 2	H	271	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LNX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LNX