Analysis of interatomic Contacts of Structural Units in PDB entry:
5LO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LO9 entry

There are 2 chains in PDB entry 5LO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1VAL 515
B
 PRO 1ALA 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5LO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 11Right-handed alpha
Helix 2
AA2
A
21 26Right-handed alpha
Helix 3
AA3
A
44 57Right-handed alpha
Helix 4
AA4
A
65 72Right-handed alpha
Helix 5
AA5
A
73 87Right-handed alpha
Helix 6
AA6
A
101 111Right-handed alpha
Helix 7
AA7
A
112 117Right-handed alpha
Helix 8
AA8
A
120 126Right-handed alpha
Helix 9
AA9
A
127 130Right-handed 310
Helix 10
AB1
A
143 157Right-handed alpha
Helix 11
AB2
A
162 164Right-handed 310
Helix 12
AB3
A
165 172Right-handed alpha
Helix 13
AB4
A
175 188Right-handed alpha
Helix 14
AB5
A
255 270Right-handed alpha
Helix 15
AB6
A
277 281Right-handed 310
Helix 16
AB7
A
286 290Right-handed 310
Helix 17
AB8
A
291 296Right-handed alpha
Helix 18
AB9
A
303 308Right-handed alpha
Helix 19
AC1
A
322 333Right-handed alpha
Helix 20
AC2
A
336 340Right-handed 310
Helix 21
AC3
A
350 364Right-handed alpha
Helix 22
AC4
A
390 402Right-handed alpha
Helix 23
AC5
A
402 407Right-handed alpha
Helix 24
AC6
A
434 437Right-handed 310
Helix 25
AC7
A
438 450Right-handed alpha
Helix 26
AC8
A
459 471Right-handed alpha
Helix 27
AC9
A
484 493Right-handed alpha
Helix 28
AD1
A
505 509Right-handed 310
Helix 29
AD2
B
2 11Right-handed alpha
Helix 30
AD3
B
21 26Right-handed alpha
Helix 31
AD4
B
44 57Right-handed alpha
Helix 32
AD5
B
65 71Right-handed alpha
Helix 33
AD6
B
73 87Right-handed alpha
Helix 34
AD7
B
101 111Right-handed alpha
Helix 35
AD8
B
112 117Right-handed alpha
Helix 36
AD9
B
121 126Right-handed alpha
Helix 37
AE1
B
127 130Right-handed 310
Helix 38
AE2
B
143 156Right-handed alpha
Helix 39
AE3
B
162 164Right-handed 310
Helix 40
AE4
B
165 172Right-handed alpha
Helix 41
AE5
B
175 188Right-handed alpha
Helix 42
AE6
B
255 270Right-handed alpha
Helix 43
AE7
B
277 281Right-handed 310
Helix 44
AE8
B
286 291Right-handed alpha
Helix 45
AE9
B
291 296Right-handed alpha
Helix 46
AF1
B
303 308Right-handed alpha
Helix 47
AF2
B
322 333Right-handed alpha
Helix 48
AF3
B
336 340Right-handed 310
Helix 49
AF4
B
350 364Right-handed alpha
Helix 50
AF5
B
390 402Right-handed alpha
Helix 51
AF6
B
402 407Right-handed alpha
Helix 52
AF7
B
434 437Right-handed 310
Helix 53
AF8
B
438 450Right-handed alpha
Helix 54
AF9
B
459 471Right-handed alpha
Helix 55
AG1
B
484 493Right-handed alpha
Helix 56
AG2
B
505 509Right-handed 310
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There are 4 sheets in PDB entry 5LO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
319 321anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 415first strand
Strand 2
A
418 421anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
319 321anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 415first strand
Strand 2
B
418 421anti-parallel
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