Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LOA entry

There are 2 chains in PDB entry 5LOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 320
B
 THR 2VAL 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5LOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
57 59Right-handed 310
Helix 4
AA4
A
70 80Right-handed alpha
Helix 5
AA5
A
91 93Right-handed 310
Helix 6
AA6
A
94 110Right-handed alpha
Helix 7
AA7
A
122 135Right-handed alpha
Helix 8
AA8
A
149 158Right-handed alpha
Helix 9
AA9
A
172 181Right-handed alpha
Helix 10
AB1
A
188 192Right-handed alpha
Helix 11
AB2
A
202 204Right-handed 310
Helix 12
AB3
A
205 215Right-handed alpha
Helix 13
AB4
A
231 239Right-handed alpha
Helix 14
AB5
A
269 291Right-handed alpha
Helix 15
AB6
A
298 302Right-handed 310
Helix 16
AB7
A
303 308Right-handed 310
Helix 17
AB8
A
311 320Right-handed alpha
Helix 18
AB9
B
12 23Right-handed alpha
Helix 19
AC1
B
50 59Right-handed 310
Helix 20
AC2
B
70 80Right-handed alpha
Helix 21
AC3
B
91 93Right-handed 310
Helix 22
AC4
B
94 110Right-handed alpha
Helix 23
AC5
B
122 135Right-handed alpha
Helix 24
AC6
B
149 158Right-handed alpha
Helix 25
AC7
B
172 181Right-handed alpha
Helix 26
AC8
B
189 191Right-handed 310
Helix 27
AC9
B
202 204Right-handed 310
Helix 28
AD1
B
205 215Right-handed alpha
Helix 29
AD2
B
231 239Right-handed alpha
Helix 30
AD3
B
269 291Right-handed alpha
Helix 31
AD4
B
298 302Right-handed 310
Helix 32
AD5
B
303 308Right-handed 310
Helix 33
AD6
B
311 320Right-handed alpha
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There are 5 sheets in PDB entry 5LOA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
28 35parallel
Strand 3
A
4 9parallel
Strand 4
A
61 64parallel
Strand 5
A
84 86parallel
Strand 6
A
112 114parallel
Strand 7
A
295 297parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 144first strand
Strand 2
A
244 253anti-parallel
Strand 3
A
258 267anti-parallel
Strand 4
B
258 267anti-parallel
Strand 5
B
244 253anti-parallel
Strand 6
B
138 144anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
193 200anti-parallel
Strand 4
A
225 229parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
28 35parallel
Strand 3
B
4 9parallel
Strand 4
B
61 64parallel
Strand 5
B
84 86parallel
Strand 6
B
112 114parallel
Strand 7
B
295 297parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
164 171anti-parallel
Strand 3
B
193 200anti-parallel
Strand 4
B
225 229parallel
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