Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LOB entry

There are 7 chains in PDB entry 5LOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 540ASN 677
B
 GLU 539ASN 677
C
 GLU 540ASN 677
D
 GLY -4ASP 80
E
 SER 138LEU 203
F
 UNK -17GLY 82
G
 UNK 108GLN 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5LOB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
652 664Right-handed alpha
Helix 2
AA2
B
652 664Right-handed alpha
Helix 3
AA3
C
652 664Right-handed alpha
Helix 4
AA4
D
3 78Right-handed alpha
Helix 5
AA5
E
140 142Right-handed 310
Helix 6
AA6
E
143 194Right-handed alpha
Helix 7
AA7
F
11 81Right-handed alpha
Helix 8
AA8
G
143 194Right-handed alpha
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There are 6 sheets in PDB entry 5LOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 613first strand
Strand 2
A
556 565anti-parallel
Strand 3
A
543 551anti-parallel
Strand 4
A
669 674anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 595first strand
Strand 2
A
578 584anti-parallel
Strand 3
A
625 631anti-parallel
Strand 4
A
639 646anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 614first strand
Strand 2
B
556 565anti-parallel
Strand 3
B
543 551anti-parallel
Strand 4
B
669 674anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
593 595first strand
Strand 2
B
578 584anti-parallel
Strand 3
B
624 631anti-parallel
Strand 4
B
639 647anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
606 613first strand
Strand 2
C
556 565anti-parallel
Strand 3
C
543 551anti-parallel
Strand 4
C
669 674anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
593 595first strand
Strand 2
C
578 584anti-parallel
Strand 3
C
624 631anti-parallel
Strand 4
C
639 647anti-parallel
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