Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LOC entry

There are 2 chains in PDB entry 5LOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2VAL 321
B
 ASN 4VAL 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5LOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
51 60Right-handed 310
Helix 3
AA3
A
71 81Right-handed alpha
Helix 4
AA4
A
95 111Right-handed alpha
Helix 5
AA5
A
123 136Right-handed alpha
Helix 6
AA6
A
150 159Right-handed alpha
Helix 7
AA7
A
173 182Right-handed alpha
Helix 8
AA8
A
203 205Right-handed 310
Helix 9
AA9
A
206 216Right-handed alpha
Helix 10
AB1
A
232 240Right-handed alpha
Helix 11
AB2
A
270 294Right-handed alpha
Helix 12
AB3
A
299 303Right-handed 310
Helix 13
AB4
A
304 309Right-handed 310
Helix 14
AB5
A
312 319Right-handed alpha
Helix 15
AB6
B
13 24Right-handed alpha
Helix 16
AB7
B
71 81Right-handed alpha
Helix 17
AB8
B
82 84Right-handed 310
Helix 18
AB9
B
95 108Right-handed alpha
Helix 19
AC1
B
123 136Right-handed alpha
Helix 20
AC2
B
150 159Right-handed alpha
Helix 21
AC3
B
173 182Right-handed alpha
Helix 22
AC4
B
189 193Right-handed alpha
Helix 23
AC5
B
203 205Right-handed 310
Helix 24
AC6
B
206 216Right-handed alpha
Helix 25
AC7
B
232 240Right-handed alpha
Helix 26
AC8
B
270 289Right-handed alpha
Helix 27
AC9
B
299 303Right-handed 310
Helix 28
AD1
B
304 309Right-handed 310
Helix 29
AD2
B
312 321Right-handed alpha
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There are 6 sheets in PDB entry 5LOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
29 36parallel
Strand 3
A
5 10parallel
Strand 4
A
62 65parallel
Strand 5
A
85 87parallel
Strand 6
A
114 115parallel
Strand 7
A
297 298parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
245 254anti-parallel
Strand 3
A
144 145anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
245 254anti-parallel
Strand 3
A
259 268anti-parallel
Strand 4
B
259 268anti-parallel
Strand 5
B
245 254anti-parallel
Strand 6
B
140 145anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
165 172anti-parallel
Strand 3
A
194 201anti-parallel
Strand 4
A
226 230parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
29 36parallel
Strand 3
B
5 10parallel
Strand 4
B
62 65parallel
Strand 5
B
85 87parallel
Strand 6
B
114 115parallel
Strand 7
B
297 298parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
165 172anti-parallel
Strand 3
B
194 201anti-parallel
Strand 4
B
225 230parallel
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