Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LOD entry

There are 2 chains in PDB entry 5LOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1TYR 327
A
 MET 1TYR 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5LOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
22 31Right-handed alpha
Helix 2
AA2
B
42 54Right-handed alpha
Helix 3
AA3
B
60 64Right-handed 310
Helix 4
AA4
B
65 69Right-handed 310
Helix 5
AA5
B
92 97Right-handed 310
Helix 6
AA6
B
99 112Right-handed alpha
Helix 7
AA7
B
123 126Right-handed 310
Helix 8
AA8
B
130 143Right-handed alpha
Helix 9
AA9
B
155 158Right-handed 310
Helix 10
AB1
B
173 176Right-handed 310
Helix 11
AB2
B
191 196Right-handed 310
Helix 12
AB3
B
198 206Right-handed 310
Helix 13
AB4
B
275 283Right-handed alpha
Helix 14
AB5
B
294 304Right-handed alpha
Helix 15
AB6
B
307 324Right-handed alpha
Helix 16
AB7
A
22 31Right-handed alpha
Helix 17
AB8
A
42 54Right-handed alpha
Helix 18
AB9
A
65 69Right-handed 310
Helix 19
AC1
A
93 97Right-handed 310
Helix 20
AC2
A
99 112Right-handed alpha
Helix 21
AC3
A
123 129Right-handed 310
Helix 22
AC4
A
130 143Right-handed alpha
Helix 23
AC5
A
155 158Right-handed 310
Helix 24
AC6
A
173 176Right-handed 310
Helix 25
AC7
A
191 196Right-handed 310
Helix 26
AC8
A
198 206Right-handed 310
Helix 27
AC9
A
275 283Right-handed alpha
Helix 28
AD1
A
294 304Right-handed alpha
Helix 29
AD2
A
307 324Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5LOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
13 17parallel
Strand 3
B
74 78parallel
Strand 4
B
115 121parallel
Strand 5
B
164 171anti-parallel
Strand 6
B
148 153anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
228 231anti-parallel
Strand 3
B
240 243anti-parallel
Strand 4
B
264 267parallel
Strand 5
B
270 272anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
13 17parallel
Strand 3
A
74 78parallel
Strand 4
A
115 121parallel
Strand 5
A
164 171anti-parallel
Strand 6
A
148 153anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
228 231anti-parallel
Strand 3
A
240 243anti-parallel
Strand 4
A
264 267parallel
Strand 5
A
270 273anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il