Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LOE entry

There are 4 chains in PDB entry 5LOE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 258
B	ALA 2	SER 258
C	ALA 2	SER 258
D	ALA 2	SER 258

There are 36 helices in PDB entry 5LOE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	18	Right-handed alpha
Helix 2	AA2	A	23	36	Right-handed alpha
Helix 3	AA3	A	59	69	Right-handed alpha
Helix 4	AA4	A	72	80	Right-handed alpha
Helix 5	AA5	A	136	179	Right-handed alpha
Helix 6	AA6	A	180	193	Right-handed alpha
Helix 7	AA7	A	202	211	Right-handed alpha
Helix 8	AA8	A	213	227	Right-handed alpha
Helix 9	AA9	A	246	256	Right-handed alpha
Helix 10	AB1	B	3	18	Right-handed alpha
Helix 11	AB2	B	23	36	Right-handed alpha
Helix 12	AB3	B	59	69	Right-handed alpha
Helix 13	AB4	B	72	80	Right-handed alpha
Helix 14	AB5	B	136	179	Right-handed alpha
Helix 15	AB6	B	180	194	Right-handed alpha
Helix 16	AB7	B	202	211	Right-handed alpha
Helix 17	AB8	B	213	228	Right-handed alpha
Helix 18	AB9	B	247	256	Right-handed alpha
Helix 19	AC1	C	3	18	Right-handed alpha
Helix 20	AC2	C	23	36	Right-handed alpha
Helix 21	AC3	C	59	69	Right-handed alpha
Helix 22	AC4	C	72	80	Right-handed alpha
Helix 23	AC5	C	136	179	Right-handed alpha
Helix 24	AC6	C	180	194	Right-handed alpha
Helix 25	AC7	C	202	208	Right-handed alpha
Helix 26	AC8	C	213	228	Right-handed alpha
Helix 27	AC9	C	247	257	Right-handed alpha
Helix 28	AD1	D	3	18	Right-handed alpha
Helix 29	AD2	D	23	36	Right-handed alpha
Helix 30	AD3	D	59	69	Right-handed alpha
Helix 31	AD4	D	72	80	Right-handed alpha
Helix 32	AD5	D	136	178	Right-handed alpha
Helix 33	AD6	D	180	194	Right-handed alpha
Helix 34	AD7	D	203	208	Right-handed alpha
Helix 35	AD8	D	213	227	Right-handed alpha
Helix 36	AD9	D	247	257	Right-handed alpha

There are 8 sheets in PDB entry 5LOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	52	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	122	131	anti-parallel
Strand 4	A	109	117	anti-parallel
Strand 5	A	86	89	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	240	244	anti-parallel
Strand 3	A	230	234	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	38	43	anti-parallel
Strand 3	B	122	131	anti-parallel
Strand 4	B	109	117	anti-parallel
Strand 5	B	86	89	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	201	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	230	234	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	52	first strand
Strand 2	C	38	42	anti-parallel
Strand 3	C	122	131	anti-parallel
Strand 4	C	109	117	anti-parallel
Strand 5	C	86	89	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	201	first strand
Strand 2	C	240	244	anti-parallel
Strand 3	C	230	233	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	52	first strand
Strand 2	D	38	43	anti-parallel
Strand 3	D	122	131	anti-parallel
Strand 4	D	109	117	anti-parallel
Strand 5	D	86	89	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	201	first strand
Strand 2	D	239	244	anti-parallel
Strand 3	D	230	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LOE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOE