Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LOG entry

There are 2 chains in PDB entry 5LOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 222
B
 ILE 2LYS 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5LOG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
23 35Right-handed alpha
Helix 3
AA3
A
38 42Right-handed 310
Helix 4
AA4
A
44 58Right-handed alpha
Helix 5
AA5
A
71 81Right-handed alpha
Helix 6
AA6
A
93 107Right-handed alpha
Helix 7
AA7
A
109 111Right-handed 310
Helix 8
AA8
A
119 129Right-handed alpha
Helix 9
AA9
A
144 146Right-handed 310
Helix 10
AB1
A
147 158Right-handed alpha
Helix 11
AB2
A
171 175Right-handed 310
Helix 12
AB3
A
184 199Right-handed alpha
Helix 13
AB4
B
8 20Right-handed alpha
Helix 14
AB5
B
23 35Right-handed alpha
Helix 15
AB6
B
44 58Right-handed alpha
Helix 16
AB7
B
71 81Right-handed alpha
Helix 17
AB8
B
96 107Right-handed alpha
Helix 18
AB9
B
109 111Right-handed 310
Helix 19
AC1
B
119 129Right-handed alpha
Helix 20
AC2
B
144 146Right-handed 310
Helix 21
AC3
B
147 158Right-handed alpha
Helix 22
AC4
B
171 178Right-handed 310
Helix 23
AC5
B
184 199Right-handed alpha
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There are 2 sheets in PDB entry 5LOG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
86 91parallel
Strand 3
A
62 66parallel
Strand 4
A
136 141parallel
Strand 5
A
159 168parallel
Strand 6
A
214 219anti-parallel
Strand 7
A
203 208anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
86 91parallel
Strand 3
B
62 67parallel
Strand 4
B
136 141parallel
Strand 5
B
159 168parallel
Strand 6
B
214 219anti-parallel
Strand 7
B
203 208anti-parallel
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