Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LOH entry

There are 2 chains in PDB entry 5LOH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 30PRO 854
B
 PRO 30PRO 854
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5LOH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
117 126Right-handed alpha
Helix 3
AA3
A
129 150Right-handed alpha
Helix 4
AA4
A
746 751Right-handed alpha
Helix 5
AA5
A
757 774Right-handed alpha
Helix 6
AA6
A
782 793Right-handed alpha
Helix 7
AA7
A
799 803Right-handed 310
Helix 8
AA8
A
805 816Right-handed alpha
Helix 9
AA9
A
825 831Right-handed alpha
Helix 10
AB1
A
832 836Right-handed 310
Helix 11
AB2
A
839 846Right-handed 310
Helix 12
AB3
B
31 35Right-handed 310
Helix 13
AB4
B
66 72Right-handed alpha
Helix 14
AB5
B
117 126Right-handed alpha
Helix 15
AB6
B
129 150Right-handed alpha
Helix 16
AB7
B
746 751Right-handed alpha
Helix 17
AB8
B
757 774Right-handed alpha
Helix 18
AB9
B
782 790Right-handed alpha
Helix 19
AC1
B
799 803Right-handed 310
Helix 20
AC2
B
805 816Right-handed alpha
Helix 21
AC3
B
825 831Right-handed alpha
Helix 22
AC4
B
839 846Right-handed 310
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There are 4 sheets in PDB entry 5LOH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
58 65anti-parallel
Strand 4
A
105 111anti-parallel
Strand 5
A
96 98anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
170 172anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
48 53anti-parallel
Strand 3
B
58 65anti-parallel
Strand 4
B
105 111anti-parallel
Strand 5
B
96 101anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
170 172anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il