Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LOJ entry

There are 2 chains in PDB entry 5LOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 256
B
 ALA 2LEU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5LOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
24 36Right-handed alpha
Helix 3
AA3
A
64 69Right-handed alpha
Helix 4
AA4
A
75 82Right-handed alpha
Helix 5
AA5
A
136 152Right-handed alpha
Helix 6
AA6
A
153 164Right-handed alpha
Helix 7
AA7
A
167 176Right-handed alpha
Helix 8
AA8
A
177 179Right-handed 310
Helix 9
AA9
A
180 193Right-handed alpha
Helix 10
AB1
A
202 211Right-handed alpha
Helix 11
AB2
A
213 227Right-handed alpha
Helix 12
AB3
A
247 255Right-handed alpha
Helix 13
AB4
B
3 16Right-handed alpha
Helix 14
AB5
B
24 35Right-handed alpha
Helix 15
AB6
B
64 69Right-handed alpha
Helix 16
AB7
B
75 81Right-handed alpha
Helix 17
AB8
B
136 152Right-handed alpha
Helix 18
AB9
B
152 163Right-handed alpha
Helix 19
AC1
B
167 178Right-handed alpha
Helix 20
AC2
B
180 193Right-handed alpha
Helix 21
AC3
B
202 211Right-handed alpha
Helix 22
AC4
B
213 227Right-handed alpha
Helix 23
AC5
B
246 255Right-handed alpha
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There are 4 sheets in PDB entry 5LOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
121 129anti-parallel
Strand 4
A
111 118anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
241 244anti-parallel
Strand 3
A
230 231anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
39 42anti-parallel
Strand 3
B
121 129anti-parallel
Strand 4
B
111 118anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
241 244anti-parallel
Strand 3
B
230 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il