Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LOO entry

There are 14 chains in PDB entry 5LOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	SER 258
B	ALA 2	SER 258
C	ALA 2	SER 258
D	ALA 2	SER 258
E	ALA 2	SER 258
F	ALA 2	SER 258
G	ALA 2	SER 258
H	ALA 2	SER 258
I	ALA 2	SER 258
J	ALA 2	SER 258
K	ALA 2	SER 258
L	ALA 2	SER 258
M	ALA 2	SER 258
N	ALA 2	SER 258

There are136 helices in PDB entry 5LOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	9	Right-handed alpha
Helix 2	AA2	A	24	36	Right-handed alpha
Helix 3	AA3	A	59	64	Right-handed alpha
Helix 4	AA4	A	72	78	Right-handed alpha
Helix 5	AA5	A	99	106	Right-handed 310
Helix 6	AA6	A	137	147	Right-handed alpha
Helix 7	AA7	A	149	154	Right-handed alpha
Helix 8	AA8	A	154	159	Right-handed alpha
Helix 9	AA9	A	162	178	Right-handed alpha
Helix 10	AB1	A	180	192	Right-handed alpha
Helix 11	AB2	A	213	228	Right-handed alpha
Helix 12	AB3	A	248	255	Right-handed alpha
Helix 13	AB4	B	31	36	Right-handed alpha
Helix 14	AB5	B	74	79	Right-handed alpha
Helix 15	AB6	B	136	140	Right-handed 310
Helix 16	AB7	B	150	155	Right-handed alpha
Helix 17	AB8	B	157	162	Right-handed alpha
Helix 18	AB9	B	166	178	Right-handed alpha
Helix 19	AC1	B	180	194	Right-handed alpha
Helix 20	AC2	B	215	222	Right-handed alpha
Helix 21	AC3	B	248	254	Right-handed alpha
Helix 22	AC4	C	3	5	Right-handed 310
Helix 23	AC5	C	6	11	Right-handed alpha
Helix 24	AC6	C	24	29	Right-handed alpha
Helix 25	AC7	C	31	36	Right-handed alpha
Helix 26	AC8	C	61	66	Right-handed alpha
Helix 27	AC9	C	74	80	Right-handed alpha
Helix 28	AD1	C	146	175	Right-handed alpha
Helix 29	AD2	C	176	179	Right-handed 310
Helix 30	AD3	C	183	188	Right-handed alpha
Helix 31	AD4	C	213	216	Right-handed 310
Helix 32	AD5	C	217	226	Right-handed alpha
Helix 33	AD6	C	249	255	Right-handed alpha
Helix 34	AD7	D	27	32	Right-handed alpha
Helix 35	AD8	D	73	81	Right-handed alpha
Helix 36	AD9	D	99	103	Right-handed 310
Helix 37	AE1	D	150	155	Right-handed 310
Helix 38	AE2	D	167	178	Right-handed alpha
Helix 39	AE3	D	184	194	Right-handed alpha
Helix 40	AE4	D	202	211	Right-handed alpha
Helix 41	AE5	D	215	220	Right-handed alpha
Helix 42	AE6	D	222	228	Right-handed alpha
Helix 43	AE7	D	249	255	Right-handed alpha
Helix 44	AE8	E	6	11	Right-handed alpha
Helix 45	AE9	E	26	30	Right-handed 310
Helix 46	AF1	E	102	106	Right-handed 310
Helix 47	AF2	E	138	143	Right-handed alpha
Helix 48	AF3	E	158	163	Right-handed alpha
Helix 49	AF4	E	167	176	Right-handed alpha
Helix 50	AF5	F	3	7	Right-handed 310
Helix 51	AF6	F	23	36	Right-handed alpha
Helix 52	AF7	F	73	79	Right-handed alpha
Helix 53	AF8	F	99	106	Right-handed 310
Helix 54	AF9	F	137	145	Right-handed 310
Helix 55	AG1	F	150	157	Right-handed alpha
Helix 56	AG2	F	159	177	Right-handed alpha
Helix 57	AG3	F	180	191	Right-handed alpha
Helix 58	AG4	F	215	221	Right-handed alpha
Helix 59	AG5	F	246	250	Right-handed 310
Helix 60	AG6	G	2	6	Right-handed 310
Helix 61	AG7	G	9	14	Right-handed alpha
Helix 62	AG8	G	25	30	Right-handed alpha
Helix 63	AG9	G	62	66	Right-handed 310
Helix 64	AH1	G	74	78	Right-handed 310
Helix 65	AH2	G	137	146	Right-handed alpha
Helix 66	AH3	G	154	159	Right-handed alpha
Helix 67	AH4	G	165	177	Right-handed alpha
Helix 68	AH5	G	180	193	Right-handed alpha
Helix 69	AH6	G	206	211	Right-handed alpha
Helix 70	AH7	G	213	226	Right-handed alpha
Helix 71	AH8	G	249	254	Right-handed alpha
Helix 72	AH9	H	25	29	Right-handed 310
Helix 73	AI1	H	64	69	Right-handed alpha
Helix 74	AI2	H	75	80	Right-handed alpha
Helix 75	AI3	H	144	148	Right-handed 310
Helix 76	AI4	H	168	177	Right-handed alpha
Helix 77	AI5	H	181	189	Right-handed alpha
Helix 78	AI6	H	204	209	Right-handed alpha
Helix 79	AI7	H	221	226	Right-handed alpha
Helix 80	AI8	H	246	254	Right-handed alpha
Helix 81	AI9	I	3	8	Right-handed alpha
Helix 82	AJ1	I	62	67	Right-handed alpha
Helix 83	AJ2	I	73	78	Right-handed alpha
Helix 84	AJ3	I	99	106	Right-handed 310
Helix 85	AJ4	I	144	148	Right-handed 310
Helix 86	AJ5	I	161	177	Right-handed alpha
Helix 87	AJ6	I	180	185	Right-handed alpha
Helix 88	AJ7	J	3	12	Right-handed alpha
Helix 89	AJ8	J	26	29	Right-handed 310
Helix 90	AJ9	J	30	36	Right-handed alpha
Helix 91	AK1	J	75	82	Right-handed alpha
Helix 92	AK2	J	102	106	Right-handed 310
Helix 93	AK3	J	147	177	Right-handed alpha
Helix 94	AK4	J	180	193	Right-handed alpha
Helix 95	AK5	J	203	209	Right-handed alpha
Helix 96	AK6	J	214	228	Right-handed alpha
Helix 97	AK7	J	249	254	Right-handed alpha
Helix 98	AK8	K	7	12	Right-handed alpha
Helix 99	AK9	K	23	30	Right-handed alpha
Helix 100	AL1	K	31	36	Right-handed alpha
Helix 101	AL2	K	60	65	Right-handed 310
Helix 102	AL3	K	136	141	Right-handed alpha
Helix 103	AL4	K	150	152	Right-handed 310
Helix 104	AL5	K	153	158	Right-handed alpha
Helix 105	AL6	K	158	166	Right-handed alpha
Helix 106	AL7	K	168	177	Right-handed alpha
Helix 107	AL8	K	180	194	Right-handed alpha
Helix 108	AL9	K	213	222	Right-handed alpha
Helix 109	AM1	K	249	257	Right-handed alpha
Helix 110	AM2	L	6	13	Right-handed alpha
Helix 111	AM3	L	28	36	Right-handed alpha
Helix 112	AM4	L	60	64	Right-handed 310
Helix 113	AM5	L	103	107	Right-handed 310
Helix 114	AM6	L	138	146	Right-handed alpha
Helix 115	AM7	L	147	150	Right-handed 310
Helix 116	AM8	L	151	156	Right-handed alpha
Helix 117	AM9	L	167	170	Right-handed 310
Helix 118	AN1	L	171	176	Right-handed alpha
Helix 119	AN2	L	177	179	Right-handed 310
Helix 120	AN3	L	180	192	Right-handed alpha
Helix 121	AN4	L	213	228	Right-handed alpha
Helix 122	AN5	L	249	254	Right-handed alpha
Helix 123	AN6	M	28	32	Right-handed 310
Helix 124	AN7	M	140	146	Right-handed alpha
Helix 125	AN8	M	159	164	Right-handed alpha
Helix 126	AN9	M	166	178	Right-handed alpha
Helix 127	AO1	M	180	191	Right-handed alpha
Helix 128	AO2	M	215	228	Right-handed alpha
Helix 129	AO3	M	250	255	Right-handed alpha
Helix 130	AO4	N	74	79	Right-handed alpha
Helix 131	AO5	N	102	106	Right-handed 310
Helix 132	AO6	N	162	178	Right-handed alpha
Helix 133	AO7	N	180	191	Right-handed alpha
Helix 134	AO8	N	203	211	Right-handed alpha
Helix 135	AO9	N	214	222	Right-handed alpha
Helix 136	AP1	N	250	255	Right-handed alpha

There are 23 sheets in PDB entry 5LOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	39	43	anti-parallel
Strand 3	A	121	130	anti-parallel
Strand 4	A	110	118	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	242	244	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	110	114	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	43	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	112	114	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	233	first strand
Strand 2	C	241	242	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	52	first strand
Strand 2	D	39	42	anti-parallel
Strand 3	D	125	130	anti-parallel
Strand 4	D	110	115	anti-parallel
Strand 5	D	86	89	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	38	42	anti-parallel
Strand 3	E	121	130	anti-parallel
Strand 4	E	110	118	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	234	first strand
Strand 2	E	240	244	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	51	first strand
Strand 2	F	39	42	anti-parallel
Strand 3	F	122	129	anti-parallel
Strand 4	F	111	117	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	230	233	first strand
Strand 2	G	241	244	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	52	first strand
Strand 2	H	38	42	anti-parallel
Strand 3	H	125	129	anti-parallel
Strand 4	H	112	115	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	86	87	first strand
Strand 2	I	110	114	anti-parallel
Strand 3	I	126	130	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	230	234	first strand
Strand 2	I	240	244	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	38	41	first strand
Strand 2	J	126	129	anti-parallel
Strand 3	J	112	113	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	200	202	first strand
Strand 2	J	239	243	anti-parallel
Strand 3	J	231	232	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	43	first strand
Strand 2	K	121	130	anti-parallel
Strand 3	K	110	118	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	230	233	first strand
Strand 2	K	241	244	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	52	first strand
Strand 2	L	39	43	anti-parallel
Strand 3	L	124	130	anti-parallel
Strand 4	L	110	114	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	198	202	first strand
Strand 2	L	239	243	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	48	50	first strand
Strand 2	M	40	42	anti-parallel
Strand 3	M	125	130	anti-parallel
Strand 4	M	110	114	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	230	231	first strand
Strand 2	M	243	244	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	41	first strand
Strand 2	N	121	127	anti-parallel
Strand 3	N	114	118	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	199	201	first strand
Strand 2	N	240	244	anti-parallel
Strand 3	N	230	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOO