Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LOR entry

There are 2 chains in PDB entry 5LOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL -2GLY 287
B
 VAL -2LEU 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5LOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 19Right-handed 310
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
38 52Right-handed alpha
Helix 4
AA4
A
87 93Right-handed alpha
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
158 162Right-handed 310
Helix 7
AA7
A
169 173Right-handed 310
Helix 8
AA8
A
174 195Right-handed alpha
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
230 240Right-handed alpha
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
256 260Right-handed alpha
Helix 13
AB4
A
261 271Right-handed 310
Helix 14
AB5
A
272 286Right-handed alpha
Helix 15
AB6
B
27 30Right-handed 310
Helix 16
AB7
B
38 48Right-handed alpha
Helix 17
AB8
B
87 93Right-handed alpha
Helix 18
AB9
B
98 110Right-handed alpha
Helix 19
AC1
B
173 195Right-handed alpha
Helix 20
AC2
B
197 201Right-handed 310
Helix 21
AC3
B
214 216Right-handed 310
Helix 22
AC4
B
230 240Right-handed alpha
Helix 23
AC5
B
256 260Right-handed alpha
Helix 24
AC6
B
272 286Right-handed alpha
Helix 25
AC7
B
292 296Right-handed 310
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There are 7 sheets in PDB entry 5LOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
205 212anti-parallel
Strand 3
A
218 226anti-parallel
Strand 4
A
122 128parallel
Strand 5
A
154 155anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
78 86parallel
Strand 3
A
59 68anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
133 138anti-parallel
Strand 3
A
251 255anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
205 212anti-parallel
Strand 3
B
16 17anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
205 212anti-parallel
Strand 3
B
219 226anti-parallel
Strand 4
B
122 128parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
78 86parallel
Strand 3
B
59 68anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
133 139anti-parallel
Strand 3
B
248 255anti-parallel
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