Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LOY entry

There are 4 chains in PDB entry 5LOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	TRP 239
B	THR 1	TRP 239
C	THR 1	TRP 239
D	THR 1	TRP 239

There are 25 helices in PDB entry 5LOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	63	Right-handed alpha
Helix 2	AA2	A	72	76	Right-handed 310
Helix 3	AA3	A	78	95	Right-handed alpha
Helix 4	AA4	A	152	160	Right-handed alpha
Helix 5	AA5	A	165	184	Right-handed alpha
Helix 6	AA6	A	213	233	Right-handed alpha
Helix 7	AA7	B	51	63	Right-handed alpha
Helix 8	AA8	B	72	76	Right-handed 310
Helix 9	AA9	B	78	95	Right-handed alpha
Helix 10	AB1	B	152	160	Right-handed alpha
Helix 11	AB2	B	165	184	Right-handed alpha
Helix 12	AB3	B	213	233	Right-handed alpha
Helix 13	AB4	C	51	63	Right-handed alpha
Helix 14	AB5	C	72	76	Right-handed 310
Helix 15	AB6	C	78	95	Right-handed alpha
Helix 16	AB7	C	152	160	Right-handed alpha
Helix 17	AB8	C	165	184	Right-handed alpha
Helix 18	AB9	C	213	233	Right-handed alpha
Helix 19	AC1	D	51	63	Right-handed alpha
Helix 20	AC2	D	72	76	Right-handed 310
Helix 21	AC3	D	78	95	Right-handed alpha
Helix 22	AC4	D	149	151	Right-handed 310
Helix 23	AC5	D	152	160	Right-handed alpha
Helix 24	AC6	D	165	184	Right-handed alpha
Helix 25	AC7	D	213	233	Right-handed alpha

There are 12 sheets in PDB entry 5LOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	147	first strand
Strand 2	A	2	8	anti-parallel
Strand 3	A	11	16	anti-parallel
Strand 4	A	191	197	anti-parallel
Strand 5	A	205	209	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	27	29	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	38	first strand
Strand 2	A	42	50	anti-parallel
Strand 3	A	110	118	anti-parallel
Strand 4	A	124	128	anti-parallel
Strand 5	A	134	136	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	147	first strand
Strand 2	B	2	8	anti-parallel
Strand 3	B	11	16	anti-parallel
Strand 4	B	191	197	anti-parallel
Strand 5	B	205	209	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	21	first strand
Strand 2	B	27	29	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	42	50	anti-parallel
Strand 3	B	110	118	anti-parallel
Strand 4	B	124	128	anti-parallel
Strand 5	B	134	136	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	2	8	anti-parallel
Strand 3	C	11	16	anti-parallel
Strand 4	C	191	197	anti-parallel
Strand 5	C	205	209	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	21	first strand
Strand 2	C	27	29	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	38	first strand
Strand 2	C	42	50	anti-parallel
Strand 3	C	110	118	anti-parallel
Strand 4	C	124	128	anti-parallel
Strand 5	C	134	136	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	147	first strand
Strand 2	D	2	8	anti-parallel
Strand 3	D	11	16	anti-parallel
Strand 4	D	191	197	anti-parallel
Strand 5	D	205	209	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	27	29	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	42	50	anti-parallel
Strand 3	D	110	118	anti-parallel
Strand 4	D	124	128	anti-parallel
Strand 5	D	134	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LOY