Analysis of interatomic Contacts of Structural Units in PDB entry:
5LP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LP2 entry

There are 4 chains in PDB entry 5LP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 28MET 431
A
 GLN 28MET 431
C
 GLN 28MET 431
D
 GLN 28GLN 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5LP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
31 40Right-handed alpha
Helix 2
AA2
B
52 73Right-handed alpha
Helix 3
AA3
B
77 98Right-handed alpha
Helix 4
AA4
B
99 101Right-handed 310
Helix 5
AA5
B
159 179Right-handed alpha
Helix 6
AA6
B
219 238Right-handed alpha
Helix 7
AA7
B
258 263Right-handed alpha
Helix 8
AA8
B
273 299Right-handed alpha
Helix 9
AA9
B
315 351Right-handed alpha
Helix 10
AB1
B
387 405Right-handed alpha
Helix 11
AB2
B
405 423Right-handed alpha
Helix 12
AB3
A
31 40Right-handed alpha
Helix 13
AB4
A
52 73Right-handed alpha
Helix 14
AB5
A
77 98Right-handed alpha
Helix 15
AB6
A
99 101Right-handed 310
Helix 16
AB7
A
159 179Right-handed alpha
Helix 17
AB8
A
219 238Right-handed alpha
Helix 18
AB9
A
258 263Right-handed alpha
Helix 19
AC1
A
273 299Right-handed alpha
Helix 20
AC2
A
315 351Right-handed alpha
Helix 21
AC3
A
387 405Right-handed alpha
Helix 22
AC4
A
405 423Right-handed alpha
Helix 23
AC5
C
31 40Right-handed alpha
Helix 24
AC6
C
52 73Right-handed alpha
Helix 25
AC7
C
77 98Right-handed alpha
Helix 26
AC8
C
99 101Right-handed 310
Helix 27
AC9
C
159 179Right-handed alpha
Helix 28
AD1
C
219 238Right-handed alpha
Helix 29
AD2
C
258 263Right-handed alpha
Helix 30
AD3
C
273 299Right-handed alpha
Helix 31
AD4
C
315 351Right-handed alpha
Helix 32
AD5
C
387 405Right-handed alpha
Helix 33
AD6
C
405 423Right-handed alpha
Helix 34
AD7
D
31 40Right-handed alpha
Helix 35
AD8
D
52 73Right-handed alpha
Helix 36
AD9
D
77 98Right-handed alpha
Helix 37
AE1
D
99 101Right-handed 310
Helix 38
AE2
D
159 179Right-handed alpha
Helix 39
AE3
D
219 238Right-handed alpha
Helix 40
AE4
D
258 263Right-handed alpha
Helix 41
AE5
D
273 299Right-handed alpha
Helix 42
AE6
D
315 351Right-handed alpha
Helix 43
AE7
D
387 405Right-handed alpha
Helix 44
AE8
D
405 423Right-handed alpha
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There are 4 sheets in PDB entry 5LP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 132first strand
Strand 2
B
116 121anti-parallel
Strand 3
B
191 201anti-parallel
Strand 4
B
207 217anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 132first strand
Strand 2
A
116 121anti-parallel
Strand 3
A
191 201anti-parallel
Strand 4
A
207 217anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 132first strand
Strand 2
C
116 121anti-parallel
Strand 3
C
191 201anti-parallel
Strand 4
C
207 217anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 132first strand
Strand 2
D
116 121anti-parallel
Strand 3
D
191 201anti-parallel
Strand 4
D
207 217anti-parallel
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