Analysis of interatomic Contacts of Structural Units in PDB entry:
5LP4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LP4 entry

There are 2 chains in PDB entry 5LP4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 45	LEU 588
B	LYS 45	LEU 588

There are 39 helices in PDB entry 5LP4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	95	Right-handed alpha
Helix 2	AA2	A	99	108	Right-handed alpha
Helix 3	AA3	A	127	140	Right-handed alpha
Helix 4	AA4	A	159	164	Right-handed alpha
Helix 5	AA5	A	170	176	Right-handed alpha
Helix 6	AA6	A	189	195	Right-handed alpha
Helix 7	AA7	A	195	201	Right-handed alpha
Helix 8	AA8	A	236	247	Right-handed alpha
Helix 9	AA9	A	274	279	Right-handed 310
Helix 10	AB1	A	283	293	Right-handed alpha
Helix 11	AB2	A	309	312	Right-handed 310
Helix 12	AB3	A	313	325	Right-handed alpha
Helix 13	AB4	A	358	366	Right-handed alpha
Helix 14	AB5	A	367	378	Right-handed alpha
Helix 15	AB6	A	379	390	Right-handed alpha
Helix 16	AB7	A	410	418	Right-handed alpha
Helix 17	AB8	A	423	432	Right-handed alpha
Helix 18	AB9	A	440	454	Right-handed alpha
Helix 19	AC1	A	474	494	Right-handed alpha
Helix 20	AC2	A	571	585	Right-handed alpha
Helix 21	AC3	B	80	95	Right-handed alpha
Helix 22	AC4	B	99	108	Right-handed alpha
Helix 23	AC5	B	127	140	Right-handed alpha
Helix 24	AC6	B	159	164	Right-handed alpha
Helix 25	AC7	B	170	176	Right-handed alpha
Helix 26	AC8	B	189	195	Right-handed alpha
Helix 27	AC9	B	195	201	Right-handed alpha
Helix 28	AD1	B	236	247	Right-handed alpha
Helix 29	AD2	B	274	279	Right-handed 310
Helix 30	AD3	B	283	293	Right-handed alpha
Helix 31	AD4	B	309	312	Right-handed 310
Helix 32	AD5	B	313	325	Right-handed alpha
Helix 33	AD6	B	358	365	Right-handed alpha
Helix 34	AD7	B	367	378	Right-handed alpha
Helix 35	AD8	B	379	390	Right-handed alpha
Helix 36	AD9	B	423	432	Right-handed alpha
Helix 37	AE1	B	440	454	Right-handed alpha
Helix 38	AE2	B	474	494	Right-handed alpha
Helix 39	AE3	B	571	585	Right-handed alpha

There are 14 sheets in PDB entry 5LP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	51	first strand
Strand 2	A	205	212	anti-parallel
Strand 3	A	218	224	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	126	first strand
Strand 2	A	63	76	anti-parallel
Strand 3	A	144	152	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	126	first strand
Strand 2	A	63	76	anti-parallel
Strand 3	A	56	57	anti-parallel
Strand 4	A	231	232	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	185	187	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	252	258	anti-parallel
Strand 3	A	556	562	anti-parallel
Strand 4	A	542	549	anti-parallel
Strand 5	A	511	517	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	355	357	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	347	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	205	212	anti-parallel
Strand 3	B	218	224	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	126	first strand
Strand 2	B	63	76	anti-parallel
Strand 3	B	144	152	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	126	first strand
Strand 2	B	63	76	anti-parallel
Strand 3	B	56	57	anti-parallel
Strand 4	B	231	232	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	185	187	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	270	first strand
Strand 2	B	252	258	anti-parallel
Strand 3	B	556	562	anti-parallel
Strand 4	B	543	549	anti-parallel
Strand 5	B	511	516	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	355	357	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	347	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LP4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LP4