Analysis of interatomic Contacts of Structural Units in PDB entry:
5LP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LP5 entry

There are 4 chains in PDB entry 5LP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 41	LEU 588
B	MET 43	LEU 588
C	LYS 92	ASN 248
D	LYS 92	GLY 127

There are 50 helices in PDB entry 5LP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	95	Right-handed alpha
Helix 2	AA2	A	101	108	Right-handed alpha
Helix 3	AA3	A	126	131	Right-handed alpha
Helix 4	AA4	A	133	139	Right-handed alpha
Helix 5	AA5	A	159	164	Right-handed alpha
Helix 6	AA6	A	170	177	Right-handed alpha
Helix 7	AA7	A	178	182	Right-handed 310
Helix 8	AA8	A	189	195	Right-handed alpha
Helix 9	AA9	A	195	201	Right-handed alpha
Helix 10	AB1	A	236	247	Right-handed alpha
Helix 11	AB2	A	274	279	Right-handed 310
Helix 12	AB3	A	283	292	Right-handed alpha
Helix 13	AB4	A	309	312	Right-handed 310
Helix 14	AB5	A	313	325	Right-handed alpha
Helix 15	AB6	A	358	365	Right-handed alpha
Helix 16	AB7	A	368	378	Right-handed alpha
Helix 17	AB8	A	379	390	Right-handed alpha
Helix 18	AB9	A	410	419	Right-handed alpha
Helix 19	AC1	A	423	431	Right-handed alpha
Helix 20	AC2	A	440	454	Right-handed alpha
Helix 21	AC3	A	474	494	Right-handed alpha
Helix 22	AC4	A	536	540	Right-handed 310
Helix 23	AC5	A	567	570	Right-handed 310
Helix 24	AC6	A	571	585	Right-handed alpha
Helix 25	AC7	B	80	95	Right-handed alpha
Helix 26	AC8	B	99	108	Right-handed alpha
Helix 27	AC9	B	126	131	Right-handed alpha
Helix 28	AD1	B	133	139	Right-handed alpha
Helix 29	AD2	B	159	164	Right-handed alpha
Helix 30	AD3	B	170	177	Right-handed alpha
Helix 31	AD4	B	178	182	Right-handed 310
Helix 32	AD5	B	189	195	Right-handed alpha
Helix 33	AD6	B	195	201	Right-handed alpha
Helix 34	AD7	B	236	247	Right-handed alpha
Helix 35	AD8	B	274	279	Right-handed 310
Helix 36	AD9	B	283	292	Right-handed alpha
Helix 37	AE1	B	309	312	Right-handed 310
Helix 38	AE2	B	313	325	Right-handed alpha
Helix 39	AE3	B	358	365	Right-handed alpha
Helix 40	AE4	B	368	378	Right-handed alpha
Helix 41	AE5	B	379	390	Right-handed alpha
Helix 42	AE6	B	410	419	Right-handed alpha
Helix 43	AE7	B	423	431	Right-handed alpha
Helix 44	AE8	B	440	454	Right-handed alpha
Helix 45	AE9	B	474	494	Right-handed alpha
Helix 46	AF1	B	536	540	Right-handed 310
Helix 47	AF2	B	567	570	Right-handed 310
Helix 48	AF3	B	571	585	Right-handed alpha
Helix 49	AF4	C	234	239	Right-handed 310
Helix 50	AF5	D	234	239	Right-handed 310

There are 22 sheets in PDB entry 5LP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	49	first strand
Strand 2	A	204	210	anti-parallel
Strand 3	A	216	223	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	125	first strand
Strand 2	A	63	76	anti-parallel
Strand 3	A	144	152	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	125	first strand
Strand 2	A	63	76	anti-parallel
Strand 3	A	56	57	anti-parallel
Strand 4	A	231	232	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	185	187	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	252	258	anti-parallel
Strand 3	A	556	562	anti-parallel
Strand 4	A	542	549	anti-parallel
Strand 5	A	511	517	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	356	357	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	347	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	49	first strand
Strand 2	B	204	210	anti-parallel
Strand 3	B	216	223	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	125	first strand
Strand 2	B	63	76	anti-parallel
Strand 3	B	144	152	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	125	first strand
Strand 2	B	63	76	anti-parallel
Strand 3	B	56	57	anti-parallel
Strand 4	B	231	232	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	185	187	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	270	first strand
Strand 2	B	252	258	anti-parallel
Strand 3	B	556	562	anti-parallel
Strand 4	B	542	549	anti-parallel
Strand 5	B	511	517	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	356	357	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	347	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	98	first strand
Strand 2	C	241	246	anti-parallel
Strand 3	C	125	129	anti-parallel
Strand 4	C	134	141	anti-parallel
Strand 5	C	144	149	anti-parallel
Strand 6	C	111	114	anti-parallel
Strand 7	C	100	103	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	178	183	anti-parallel
Strand 4	C	223	228	anti-parallel
Strand 5	C	209	218	anti-parallel
Strand 6	C	194	197	anti-parallel
Strand 7	C	158	161	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	98	first strand
Strand 2	D	241	246	anti-parallel
Strand 3	D	125	129	anti-parallel
Strand 4	D	134	141	anti-parallel
Strand 5	D	144	149	anti-parallel
Strand 6	D	111	114	anti-parallel
Strand 7	D	100	103	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	166	172	anti-parallel
Strand 3	D	178	183	anti-parallel
Strand 4	D	223	228	anti-parallel
Strand 5	D	209	218	anti-parallel
Strand 6	D	194	197	anti-parallel
Strand 7	D	158	161	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	98	first strand
Strand 2	E	241	246	anti-parallel
Strand 3	E	125	129	anti-parallel
Strand 4	E	134	141	anti-parallel
Strand 5	E	144	149	anti-parallel
Strand 6	E	111	114	anti-parallel
Strand 7	E	100	103	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	166	172	anti-parallel
Strand 3	E	178	183	anti-parallel
Strand 4	E	223	228	anti-parallel
Strand 5	E	209	218	anti-parallel
Strand 6	E	194	197	anti-parallel
Strand 7	E	158	161	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	98	first strand
Strand 2	F	241	246	anti-parallel
Strand 3	F	125	129	anti-parallel
Strand 4	F	134	141	anti-parallel
Strand 5	F	144	149	anti-parallel
Strand 6	F	111	114	anti-parallel
Strand 7	F	100	103	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	166	172	anti-parallel
Strand 3	F	178	183	anti-parallel
Strand 4	F	223	228	anti-parallel
Strand 5	F	209	218	anti-parallel
Strand 6	F	194	197	anti-parallel
Strand 7	F	158	161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LP5