Analysis of interatomic Contacts of Structural Units in PDB entry:
5LP7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LP7 entry

There are 8 chains in PDB entry 5LP7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ARG 2	HIS 393
E	LYS 3	HIS 393
A	MET 1	HIS 393
B	ARG 2	HIS 393
C	ARG 2	HIS 393
F	MET 1	HIS 393
G	ARG 2	HIS 393
D	MET 1	HIS 393

There are135 helices in PDB entry 5LP7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	25	42	Right-handed alpha
Helix 2	AA2	H	44	48	Right-handed 310
Helix 3	AA3	H	64	73	Right-handed alpha
Helix 4	AA4	H	89	104	Right-handed alpha
Helix 5	AA5	H	119	121	Right-handed 310
Helix 6	AA6	H	142	147	Right-handed alpha
Helix 7	AA7	H	156	168	Right-handed alpha
Helix 8	AA8	H	171	192	Right-handed alpha
Helix 9	AA9	H	225	231	Right-handed alpha
Helix 10	AB1	H	262	268	Right-handed alpha
Helix 11	AB2	H	290	304	Right-handed alpha
Helix 12	AB3	H	307	311	Right-handed 310
Helix 13	AB4	H	320	332	Right-handed alpha
Helix 14	AB5	H	334	338	Right-handed 310
Helix 15	AB6	H	343	348	Right-handed alpha
Helix 16	AB7	H	353	369	Right-handed alpha
Helix 17	AB8	E	25	42	Right-handed alpha
Helix 18	AB9	E	44	48	Right-handed 310
Helix 19	AC1	E	64	73	Right-handed alpha
Helix 20	AC2	E	86	88	Right-handed 310
Helix 21	AC3	E	89	104	Right-handed alpha
Helix 22	AC4	E	119	121	Right-handed 310
Helix 23	AC5	E	142	148	Right-handed alpha
Helix 24	AC6	E	156	168	Right-handed alpha
Helix 25	AC7	E	171	192	Right-handed alpha
Helix 26	AC8	E	207	209	Right-handed 310
Helix 27	AC9	E	225	232	Right-handed alpha
Helix 28	AD1	E	262	268	Right-handed alpha
Helix 29	AD2	E	285	289	Right-handed 310
Helix 30	AD3	E	297	304	Right-handed alpha
Helix 31	AD4	E	307	311	Right-handed 310
Helix 32	AD5	E	320	332	Right-handed alpha
Helix 33	AD6	E	334	338	Right-handed 310
Helix 34	AD7	E	343	348	Right-handed alpha
Helix 35	AD8	E	353	366	Right-handed alpha
Helix 36	AD9	A	25	41	Right-handed alpha
Helix 37	AE1	A	44	48	Right-handed 310
Helix 38	AE2	A	64	73	Right-handed alpha
Helix 39	AE3	A	86	88	Right-handed 310
Helix 40	AE4	A	89	104	Right-handed alpha
Helix 41	AE5	A	119	121	Right-handed 310
Helix 42	AE6	A	142	148	Right-handed alpha
Helix 43	AE7	A	156	168	Right-handed alpha
Helix 44	AE8	A	171	192	Right-handed alpha
Helix 45	AE9	A	225	231	Right-handed alpha
Helix 46	AF1	A	262	268	Right-handed alpha
Helix 47	AF2	A	285	289	Right-handed 310
Helix 48	AF3	A	291	304	Right-handed alpha
Helix 49	AF4	A	307	311	Right-handed 310
Helix 50	AF5	A	320	332	Right-handed alpha
Helix 51	AF6	A	334	338	Right-handed 310
Helix 52	AF7	A	343	348	Right-handed alpha
Helix 53	AF8	A	353	369	Right-handed alpha
Helix 54	AF9	B	25	42	Right-handed alpha
Helix 55	AG1	B	44	48	Right-handed 310
Helix 56	AG2	B	64	74	Right-handed alpha
Helix 57	AG3	B	86	88	Right-handed 310
Helix 58	AG4	B	89	104	Right-handed alpha
Helix 59	AG5	B	119	121	Right-handed 310
Helix 60	AG6	B	142	148	Right-handed alpha
Helix 61	AG7	B	156	169	Right-handed alpha
Helix 62	AG8	B	171	193	Right-handed alpha
Helix 63	AG9	B	225	231	Right-handed alpha
Helix 64	AH1	B	262	269	Right-handed alpha
Helix 65	AH2	B	291	304	Right-handed alpha
Helix 66	AH3	B	307	311	Right-handed 310
Helix 67	AH4	B	320	332	Right-handed alpha
Helix 68	AH5	B	334	338	Right-handed 310
Helix 69	AH6	B	343	348	Right-handed alpha
Helix 70	AH7	B	353	369	Right-handed alpha
Helix 71	AH8	C	25	42	Right-handed alpha
Helix 72	AH9	C	44	48	Right-handed 310
Helix 73	AI1	C	64	73	Right-handed alpha
Helix 74	AI2	C	86	88	Right-handed 310
Helix 75	AI3	C	89	104	Right-handed alpha
Helix 76	AI4	C	142	148	Right-handed alpha
Helix 77	AI5	C	156	168	Right-handed alpha
Helix 78	AI6	C	171	192	Right-handed alpha
Helix 79	AI7	C	193	197	Right-handed 310
Helix 80	AI8	C	262	269	Right-handed alpha
Helix 81	AI9	C	285	289	Right-handed 310
Helix 82	AJ1	C	290	304	Right-handed alpha
Helix 83	AJ2	C	307	311	Right-handed 310
Helix 84	AJ3	C	320	332	Right-handed alpha
Helix 85	AJ4	C	334	338	Right-handed 310
Helix 86	AJ5	C	343	348	Right-handed alpha
Helix 87	AJ6	C	353	369	Right-handed alpha
Helix 88	AJ7	F	25	42	Right-handed alpha
Helix 89	AJ8	F	44	48	Right-handed 310
Helix 90	AJ9	F	64	73	Right-handed alpha
Helix 91	AK1	F	89	104	Right-handed alpha
Helix 92	AK2	F	119	121	Right-handed 310
Helix 93	AK3	F	142	147	Right-handed alpha
Helix 94	AK4	F	156	169	Right-handed alpha
Helix 95	AK5	F	171	192	Right-handed alpha
Helix 96	AK6	F	226	231	Right-handed alpha
Helix 97	AK7	F	262	269	Right-handed alpha
Helix 98	AK8	F	294	304	Right-handed alpha
Helix 99	AK9	F	307	311	Right-handed 310
Helix 100	AL1	F	320	332	Right-handed alpha
Helix 101	AL2	F	334	338	Right-handed 310
Helix 102	AL3	F	343	348	Right-handed alpha
Helix 103	AL4	F	353	369	Right-handed alpha
Helix 104	AL5	G	25	42	Right-handed alpha
Helix 105	AL6	G	44	48	Right-handed 310
Helix 106	AL7	G	64	73	Right-handed alpha
Helix 107	AL8	G	89	104	Right-handed alpha
Helix 108	AL9	G	119	121	Right-handed 310
Helix 109	AM1	G	142	148	Right-handed alpha
Helix 110	AM2	G	156	169	Right-handed alpha
Helix 111	AM3	G	171	192	Right-handed alpha
Helix 112	AM4	G	225	232	Right-handed alpha
Helix 113	AM5	G	262	268	Right-handed alpha
Helix 114	AM6	G	290	304	Right-handed alpha
Helix 115	AM7	G	307	311	Right-handed 310
Helix 116	AM8	G	320	332	Right-handed alpha
Helix 117	AM9	G	334	338	Right-handed 310
Helix 118	AN1	G	343	348	Right-handed alpha
Helix 119	AN2	G	353	369	Right-handed alpha
Helix 120	AN3	D	25	42	Right-handed alpha
Helix 121	AN4	D	44	48	Right-handed 310
Helix 122	AN5	D	64	73	Right-handed alpha
Helix 123	AN6	D	89	104	Right-handed alpha
Helix 124	AN7	D	119	121	Right-handed 310
Helix 125	AN8	D	142	148	Right-handed alpha
Helix 126	AN9	D	156	168	Right-handed alpha
Helix 127	AO1	D	171	192	Right-handed alpha
Helix 128	AO2	D	225	232	Right-handed alpha
Helix 129	AO3	D	262	268	Right-handed alpha
Helix 130	AO4	D	291	304	Right-handed alpha
Helix 131	AO5	D	307	311	Right-handed 310
Helix 132	AO6	D	320	332	Right-handed alpha
Helix 133	AO7	D	334	338	Right-handed 310
Helix 134	AO8	D	343	348	Right-handed alpha
Helix 135	AO9	D	353	369	Right-handed alpha

There are 21 sheets in PDB entry 5LP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	16	first strand
Strand 2	H	251	261	anti-parallel
Strand 3	H	109	117	anti-parallel
Strand 4	H	51	54	parallel
Strand 5	H	81	85	parallel
Strand 6	G	81	85	anti-parallel
Strand 7	G	51	54	parallel
Strand 8	G	109	117	parallel
Strand 9	G	251	261	anti-parallel
Strand 10	G	15	16	anti-parallel

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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	313	316	first strand
Strand 2	H	373	380	parallel
Strand 3	H	384	392	anti-parallel
Strand 4	H	274	283	anti-parallel
Strand 5	H	4	11	anti-parallel
Strand 6	H	251	261	anti-parallel
Strand 7	H	109	117	anti-parallel
Strand 8	H	51	54	parallel
Strand 9	H	81	85	parallel
Strand 10	G	81	85	anti-parallel
Strand 11	G	51	54	parallel
Strand 12	G	109	117	parallel
Strand 13	G	251	261	anti-parallel
Strand 14	G	4	11	anti-parallel
Strand 15	G	274	281	anti-parallel
Strand 16	G	386	392	anti-parallel
Strand 17	G	373	378	anti-parallel
Strand 18	G	313	316	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	125	first strand
Strand 2	H	137	141	anti-parallel
Strand 3	E	137	141	anti-parallel
Strand 4	E	123	125	anti-parallel
Strand 5	F	123	125	anti-parallel
Strand 6	F	137	141	anti-parallel
Strand 7	G	137	141	anti-parallel
Strand 8	G	123	125	anti-parallel
Strand 9	H	123	125	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	202	203	first strand
Strand 2	H	213	214	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	251	261	anti-parallel
Strand 3	E	4	11	anti-parallel
Strand 4	E	274	283	anti-parallel
Strand 5	E	384	392	anti-parallel
Strand 6	E	373	380	anti-parallel
Strand 7	E	313	316	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	251	261	anti-parallel
Strand 3	E	109	117	anti-parallel
Strand 4	E	51	54	parallel
Strand 5	E	81	84	parallel
Strand 6	F	84	85	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	205	first strand
Strand 2	E	211	214	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	251	261	anti-parallel
Strand 3	A	109	117	anti-parallel
Strand 4	A	51	54	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	251	261	anti-parallel
Strand 3	A	4	11	anti-parallel
Strand 4	A	274	283	anti-parallel
Strand 5	A	384	392	anti-parallel
Strand 6	A	373	380	anti-parallel
Strand 7	A	313	316	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	84	anti-parallel
Strand 3	B	51	54	parallel
Strand 4	B	109	117	parallel
Strand 5	B	251	261	anti-parallel
Strand 6	B	15	16	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	84	anti-parallel
Strand 3	B	51	54	parallel
Strand 4	B	109	117	parallel
Strand 5	B	251	261	anti-parallel
Strand 6	B	4	11	anti-parallel
Strand 7	B	274	283	anti-parallel
Strand 8	B	384	392	anti-parallel
Strand 9	B	373	380	anti-parallel
Strand 10	B	313	316	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	B	137	141	anti-parallel
Strand 4	B	123	125	anti-parallel
Strand 5	A	123	125	anti-parallel
Strand 6	A	137	141	anti-parallel
Strand 7	D	137	141	anti-parallel
Strand 8	D	123	124	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	213	214	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	212	214	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	251	261	anti-parallel
Strand 3	C	109	117	anti-parallel
Strand 4	C	51	54	parallel
Strand 5	C	81	85	parallel
Strand 6	D	81	85	anti-parallel
Strand 7	D	51	54	parallel
Strand 8	D	109	117	parallel
Strand 9	D	251	261	anti-parallel
Strand 10	D	15	16	anti-parallel

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There are 18 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	316	first strand
Strand 2	C	372	380	parallel
Strand 3	C	384	392	anti-parallel
Strand 4	C	274	283	anti-parallel
Strand 5	C	4	11	anti-parallel
Strand 6	C	251	261	anti-parallel
Strand 7	C	109	117	anti-parallel
Strand 8	C	51	54	parallel
Strand 9	C	81	85	parallel
Strand 10	D	81	85	anti-parallel
Strand 11	D	51	54	parallel
Strand 12	D	109	117	parallel
Strand 13	D	251	261	anti-parallel
Strand 14	D	4	11	anti-parallel
Strand 15	D	274	283	anti-parallel
Strand 16	D	384	392	anti-parallel
Strand 17	D	372	380	anti-parallel
Strand 18	D	313	316	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	212	214	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	16	first strand
Strand 2	F	251	261	anti-parallel
Strand 3	F	109	117	anti-parallel
Strand 4	F	51	54	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	16	first strand
Strand 2	F	251	261	anti-parallel
Strand 3	F	4	11	anti-parallel
Strand 4	F	274	283	anti-parallel
Strand 5	F	384	392	anti-parallel
Strand 6	F	373	380	anti-parallel
Strand 7	F	313	316	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	202	203	first strand
Strand 2	G	213	214	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	213	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LP7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LP7