Analysis of interatomic Contacts of Structural Units in PDB entry:
5LP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LP8 entry

There are 2 chains in PDB entry 5LP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 3950ALA 4374
A
 ASP 3936SER 4140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5LP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3951 3973Right-handed alpha
Helix 2
AA2
B
3982 3992Right-handed 310
Helix 3
AA3
B
3993 4009Right-handed alpha
Helix 4
AA4
B
4025 4035Right-handed alpha
Helix 5
AA5
B
4038 4043Right-handed alpha
Helix 6
AA6
B
4057 4074Right-handed alpha
Helix 7
AA7
B
4075 4079Right-handed 310
Helix 8
AA8
B
4096 4100Right-handed 310
Helix 9
AA9
B
4102 4120Right-handed alpha
Helix 10
AB1
B
4129 4138Right-handed alpha
Helix 11
AB2
B
4142 4149Right-handed 310
Helix 12
AB3
B
4150 4163Right-handed alpha
Helix 13
AB4
B
4164 4168Right-handed 310
Helix 14
AB5
B
4202 4217Right-handed alpha
Helix 15
AB6
B
4219 4234Right-handed alpha
Helix 16
AB7
B
4235 4240Right-handed alpha
Helix 17
AB8
B
4243 4253Right-handed alpha
Helix 18
AB9
B
4258 4265Right-handed alpha
Helix 19
AC1
B
4275 4287Right-handed alpha
Helix 20
AC2
B
4289 4302Right-handed alpha
Helix 21
AC3
B
4310 4313Right-handed 310
Helix 22
AC4
B
4352 4365Right-handed alpha
Helix 23
AC5
A
3949 3972Right-handed alpha
Helix 24
AC6
A
3978 3990Right-handed alpha
Helix 25
AC7
A
3993 4008Right-handed alpha
Helix 26
AC8
A
4025 4035Right-handed alpha
Helix 27
AC9
A
4038 4043Right-handed alpha
Helix 28
AD1
A
4057 4073Right-handed alpha
Helix 29
AD2
A
4074 4079Right-handed 310
Helix 30
AD3
A
4096 4100Right-handed 310
Helix 31
AD4
A
4102 4120Right-handed alpha
Helix 32
AD5
A
4129 4138Right-handed alpha
Helix 33
AD6
A
4142 4149Right-handed 310
Helix 34
AD7
A
4150 4163Right-handed alpha
Helix 35
AD8
A
4164 4168Right-handed 310
Helix 36
AD9
A
4192 4196Right-handed 310
Helix 37
AE1
A
4202 4217Right-handed alpha
Helix 38
AE2
A
4219 4234Right-handed alpha
Helix 39
AE3
A
4235 4240Right-handed alpha
Helix 40
AE4
A
4243 4253Right-handed alpha
Helix 41
AE5
A
4258 4265Right-handed alpha
Helix 42
AE6
A
4275 4287Right-handed alpha
Helix 43
AE7
A
4289 4302Right-handed alpha
Helix 44
AE8
A
4310 4313Right-handed 310
Helix 45
AE9
A
4352 4364Right-handed alpha
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There are 11 sheets in PDB entry 5LP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4016 4021first strand
Strand 2
B
4045 4050parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4081 4083first strand
Strand 2
B
4091 4093anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4175 4180first strand
Strand 2
B
4183 4188anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4266 4269first strand
Strand 2
B
4323 4328parallel
Strand 3
B
4344 4348parallel
Strand 4
B
4337 4339anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4315 4316first strand
Strand 2
B
4319 4320anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4366 4367first strand
Strand 2
B
4370 4371anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4016 4021first strand
Strand 2
A
4045 4050parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4081 4083first strand
Strand 2
A
4091 4093anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4175 4180first strand
Strand 2
A
4183 4188anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4266 4269first strand
Strand 2
A
4323 4328parallel
Strand 3
A
4344 4348parallel
Strand 4
A
4337 4339anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4315 4316first strand
Strand 2
A
4319 4320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il