Analysis of interatomic Contacts of Structural Units in PDB entry:
5LPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LPK entry

There are 7 chains in PDB entry 5LPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1046GLY 1161
B
 PHE 1049LEU 1160
C
 ILE 1048GLY 1161
D
 LYS 1047GLY 1161
E
 LYS 1047SER 1159
F
 LYS 1047GLY 1161
G
 LYS 1047LEU 1160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5LPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1050 1068Right-handed alpha
Helix 2
AA2
A
1072 1076Right-handed 310
Helix 3
AA3
A
1080 1085Right-handed alpha
Helix 4
AA4
A
1088 1093Right-handed alpha
Helix 5
AA5
A
1098 1108Right-handed alpha
Helix 6
AA6
A
1113 1132Right-handed alpha
Helix 7
AA7
A
1136 1160Right-handed alpha
Helix 8
AA8
B
1050 1067Right-handed alpha
Helix 9
AA9
B
1072 1076Right-handed 310
Helix 10
AB1
B
1080 1085Right-handed alpha
Helix 11
AB2
B
1088 1093Right-handed alpha
Helix 12
AB3
B
1098 1108Right-handed alpha
Helix 13
AB4
B
1113 1132Right-handed alpha
Helix 14
AB5
B
1136 1159Right-handed alpha
Helix 15
AB6
C
1050 1068Right-handed alpha
Helix 16
AB7
C
1072 1076Right-handed 310
Helix 17
AB8
C
1080 1085Right-handed alpha
Helix 18
AB9
C
1088 1093Right-handed alpha
Helix 19
AC1
C
1098 1108Right-handed alpha
Helix 20
AC2
C
1113 1132Right-handed alpha
Helix 21
AC3
C
1136 1161Right-handed alpha
Helix 22
AC4
D
1050 1068Right-handed alpha
Helix 23
AC5
D
1072 1076Right-handed 310
Helix 24
AC6
D
1080 1085Right-handed alpha
Helix 25
AC7
D
1088 1093Right-handed alpha
Helix 26
AC8
D
1098 1108Right-handed alpha
Helix 27
AC9
D
1113 1132Right-handed alpha
Helix 28
AD1
D
1136 1161Right-handed alpha
Helix 29
AD2
E
1050 1068Right-handed alpha
Helix 30
AD3
E
1072 1076Right-handed 310
Helix 31
AD4
E
1080 1085Right-handed alpha
Helix 32
AD5
E
1088 1093Right-handed alpha
Helix 33
AD6
E
1098 1108Right-handed alpha
Helix 34
AD7
E
1113 1132Right-handed alpha
Helix 35
AD8
E
1136 1157Right-handed alpha
Helix 36
AD9
F
1050 1067Right-handed alpha
Helix 37
AE1
F
1072 1076Right-handed 310
Helix 38
AE2
F
1080 1085Right-handed alpha
Helix 39
AE3
F
1088 1093Right-handed alpha
Helix 40
AE4
F
1098 1108Right-handed alpha
Helix 41
AE5
F
1113 1132Right-handed alpha
Helix 42
AE6
F
1136 1159Right-handed alpha
Helix 43
AE7
G
1050 1068Right-handed alpha
Helix 44
AE8
G
1072 1076Right-handed 310
Helix 45
AE9
G
1080 1085Right-handed alpha
Helix 46
AF1
G
1088 1093Right-handed alpha
Helix 47
AF2
G
1098 1108Right-handed alpha
Helix 48
AF3
G
1113 1132Right-handed alpha
Helix 49
AF4
G
1136 1159Right-handed alpha
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There are no sheets in PDB entry 5LPK
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il