Analysis of interatomic Contacts of Structural Units in PDB entry:
5LPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LPN entry

There are 3 chains in PDB entry 5LPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5PRO 175
B
 LYS 918ALA 1060
C
 TYR 6PRO 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5LPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 32Right-handed alpha
Helix 2
AA2
A
68 70Right-handed 310
Helix 3
AA3
A
71 77Right-handed alpha
Helix 4
AA4
A
78 82Right-handed 310
Helix 5
AA5
A
93 99Right-handed alpha
Helix 6
AA6
A
99 111Right-handed alpha
Helix 7
AA7
A
133 145Right-handed alpha
Helix 8
AA8
A
158 173Right-handed alpha
Helix 9
AA9
B
919 960Right-handed alpha
Helix 10
AB1
B
962 973Right-handed alpha
Helix 11
AB2
B
973 1014Right-handed alpha
Helix 12
AB3
B
1027 1060Right-handed alpha
Helix 13
AB4
C
21 32Right-handed alpha
Helix 14
AB5
C
52 56Right-handed 310
Helix 15
AB6
C
68 80Right-handed 310
Helix 16
AB7
C
99 111Right-handed alpha
Helix 17
AB8
C
133 145Right-handed alpha
Helix 18
AB9
C
158 172Right-handed alpha
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There are 2 sheets in PDB entry 5LPN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 53first strand
Strand 2
A
56 65anti-parallel
Strand 3
A
8 16parallel
Strand 4
A
84 90parallel
Strand 5
A
116 122parallel
Strand 6
A
147 151parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 51first strand
Strand 2
C
58 65anti-parallel
Strand 3
C
8 15parallel
Strand 4
C
84 90parallel
Strand 5
C
118 122parallel
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