Analysis of interatomic Contacts of Structural Units in PDB entry:
5LPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LPQ entry

There are 2 chains in PDB entry 5LPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10SER 386
B
 ARG 11SER 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5LPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 77Right-handed alpha
Helix 2
AA2
A
79 86Right-handed alpha
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
104 111Right-handed alpha
Helix 5
AA5
A
136 147Right-handed alpha
Helix 6
AA6
A
164 188Right-handed alpha
Helix 7
AA7
A
189 194Right-handed alpha
Helix 8
AA8
A
207 222Right-handed alpha
Helix 9
AA9
A
236 248Right-handed alpha
Helix 10
AB1
A
249 251Right-handed 310
Helix 11
AB2
A
264 273Right-handed alpha
Helix 12
AB3
A
282 290Right-handed alpha
Helix 13
AB4
A
304 308Right-handed 310
Helix 14
AB5
A
320 326Right-handed alpha
Helix 15
AB6
A
327 337Right-handed alpha
Helix 16
AB7
A
340 367Right-handed alpha
Helix 17
AB8
A
369 384Right-handed alpha
Helix 18
AB9
B
70 77Right-handed alpha
Helix 19
AC1
B
79 86Right-handed alpha
Helix 20
AC2
B
88 93Right-handed alpha
Helix 21
AC3
B
104 111Right-handed alpha
Helix 22
AC4
B
136 147Right-handed alpha
Helix 23
AC5
B
164 188Right-handed alpha
Helix 24
AC6
B
189 194Right-handed alpha
Helix 25
AC7
B
207 222Right-handed alpha
Helix 26
AC8
B
236 248Right-handed alpha
Helix 27
AC9
B
249 251Right-handed 310
Helix 28
AD1
B
264 273Right-handed alpha
Helix 29
AD2
B
282 290Right-handed alpha
Helix 30
AD3
B
304 308Right-handed 310
Helix 31
AD4
B
320 326Right-handed alpha
Helix 32
AD5
B
327 337Right-handed alpha
Helix 33
AD6
B
340 367Right-handed alpha
Helix 34
AD7
B
369 384Right-handed alpha
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There are 8 sheets in PDB entry 5LPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 22first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
35 39anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
278 279parallel
Strand 3
A
257 259parallel
Strand 4
A
225 228parallel
Strand 5
A
197 202parallel
Strand 6
A
151 153parallel
Strand 7
A
99 101parallel
Strand 8
A
67 69parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
122 124anti-parallel
Strand 3
A
134 135anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
298 301anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 22first strand
Strand 2
B
25 32anti-parallel
Strand 3
B
35 39anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
278 279parallel
Strand 3
B
257 259parallel
Strand 4
B
225 228parallel
Strand 5
B
197 202parallel
Strand 6
B
151 153parallel
Strand 7
B
99 101parallel
Strand 8
B
67 69parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
122 124anti-parallel
Strand 3
B
134 135anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 295first strand
Strand 2
B
298 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il