Analysis of interatomic Contacts of Structural Units in PDB entry:
5LPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LPY entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5LPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 867ASP 1038
A
 HIS 1040LEU 1041
A
 VAL 1043VAL 1043
A
 THR 1045GLN 1059
A
 PHE 1061ALA 1160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5LPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
872 880Right-handed alpha
Helix 2
AA2
A
884 886Right-handed 310
Helix 3
AA3
A
918 930Right-handed alpha
Helix 4
AA4
A
931 934Right-handed 310
Helix 5
AA5
A
963 969Right-handed alpha
Helix 6
AA6
A
970 974Right-handed 310
Helix 7
AA7
A
979 999Right-handed alpha
Helix 8
AA8
A
1011 1013Right-handed 310
Helix 9
AA9
A
1054 1059Right-handed 310
Helix 10
AB1
A
1064 1082Right-handed alpha
Helix 11
AB2
A
1096 1105Right-handed alpha
Helix 12
AB3
A
1107 1111Right-handed 310
Helix 13
AB4
A
1113 1120Right-handed alpha
Helix 14
AB5
A
1123 1138Right-handed alpha
Helix 15
AB6
A
1147 1160Right-handed alpha
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There are 4 sheets in PDB entry 5LPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 870first strand
Strand 2
A
942 948parallel
Strand 3
A
951 957anti-parallel
Strand 4
A
907 913anti-parallel
Strand 5
A
895 901anti-parallel
Strand 6
A
888 892anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1004 1006first strand
Strand 2
A
1032 1034anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1015 1017first strand
Strand 2
A
1023 1025anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1041 1042first strand
Strand 2
A
1062 1063anti-parallel
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