Analysis of interatomic Contacts of Structural Units in PDB entry:
5LQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LQ5 entry

There is 1 chain in PDB entry 5LQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LEU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5LQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 35Right-handed alpha
Helix 2
AA2
A
45 55Right-handed alpha
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
A
86 89Right-handed 310
Helix 5
AA5
A
99 101Right-handed 310
Helix 6
AA6
A
107 115Right-handed 310
Helix 7
AA7
A
130 140Right-handed alpha
Helix 8
AA8
A
143 151Right-handed 310
Helix 9
AA9
A
157 167Right-handed alpha
Helix 10
AB1
A
177 187Right-handed alpha
Helix 11
AB2
A
188 191Right-handed 310
Helix 12
AB3
A
213 219Right-handed alpha
Helix 13
AB4
A
221 232Right-handed alpha
Helix 14
AB5
A
237 247Right-handed alpha
Helix 15
AB6
A
256 259Right-handed 310
Helix 16
AB7
A
260 270Right-handed alpha
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There are 2 sheets in PDB entry 5LQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
5 10parallel
Strand 3
A
60 63parallel
Strand 4
A
207 210anti-parallel
Strand 5
A
79 84anti-parallel
Strand 6
A
252 253anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
119 121parallel
Strand 3
A
172 176parallel
Strand 4
A
92 97anti-parallel
Strand 5
A
194 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il