Analysis of interatomic Contacts of Structural Units in PDB entry:
5LQD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LQD entry

There are 3 chains in PDB entry 5LQD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ASP 451
B	GLY 1	SER 450
C	GLY 1	THR 416

There are 87 helices in PDB entry 5LQD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	37	Right-handed alpha
Helix 2	AA2	A	52	61	Right-handed alpha
Helix 3	AA3	A	74	83	Right-handed alpha
Helix 4	AA4	A	88	96	Right-handed alpha
Helix 5	AA5	A	107	131	Right-handed alpha
Helix 6	AA6	A	143	146	Right-handed 310
Helix 7	AA7	A	147	156	Right-handed alpha
Helix 8	AA8	A	171	176	Right-handed alpha
Helix 9	AA9	A	179	192	Right-handed alpha
Helix 10	AB1	A	200	212	Right-handed alpha
Helix 11	AB2	A	228	237	Right-handed alpha
Helix 12	AB3	A	238	253	Right-handed alpha
Helix 13	AB4	A	265	268	Right-handed 310
Helix 14	AB5	A	269	284	Right-handed alpha
Helix 15	AB6	A	285	288	Right-handed 310
Helix 16	AB7	A	304	326	Right-handed alpha
Helix 17	AB8	A	340	351	Right-handed alpha
Helix 18	AB9	A	365	374	Right-handed alpha
Helix 19	AC1	A	388	393	Right-handed alpha
Helix 20	AC2	A	403	416	Right-handed alpha
Helix 21	AC3	A	418	434	Right-handed alpha
Helix 22	AC4	A	437	449	Right-handed alpha
Helix 23	AC5	B	52	62	Right-handed alpha
Helix 24	AC6	B	74	83	Right-handed alpha
Helix 25	AC7	B	88	95	Right-handed alpha
Helix 26	AC8	B	107	131	Right-handed alpha
Helix 27	AC9	B	143	146	Right-handed 310
Helix 28	AD1	B	147	156	Right-handed alpha
Helix 29	AD2	B	171	176	Right-handed alpha
Helix 30	AD3	B	179	191	Right-handed alpha
Helix 31	AD4	B	200	212	Right-handed alpha
Helix 32	AD5	B	228	237	Right-handed alpha
Helix 33	AD6	B	238	253	Right-handed alpha
Helix 34	AD7	B	265	268	Right-handed 310
Helix 35	AD8	B	269	284	Right-handed alpha
Helix 36	AD9	B	285	288	Right-handed 310
Helix 37	AE1	B	304	326	Right-handed alpha
Helix 38	AE2	B	340	351	Right-handed alpha
Helix 39	AE3	B	365	374	Right-handed alpha
Helix 40	AE4	B	388	393	Right-handed alpha
Helix 41	AE5	B	403	416	Right-handed alpha
Helix 42	AE6	B	418	434	Right-handed alpha
Helix 43	AE7	B	437	449	Right-handed alpha
Helix 44	AE8	C	30	37	Right-handed alpha
Helix 45	AE9	C	38	40	Right-handed 310
Helix 46	AF1	C	52	62	Right-handed alpha
Helix 47	AF2	C	74	83	Right-handed alpha
Helix 48	AF3	C	88	96	Right-handed alpha
Helix 49	AF4	C	107	131	Right-handed alpha
Helix 50	AF5	C	143	146	Right-handed 310
Helix 51	AF6	C	147	156	Right-handed alpha
Helix 52	AF7	C	171	176	Right-handed alpha
Helix 53	AF8	C	179	192	Right-handed alpha
Helix 54	AF9	C	200	212	Right-handed alpha
Helix 55	AG1	C	228	237	Right-handed alpha
Helix 56	AG2	C	238	253	Right-handed alpha
Helix 57	AG3	C	269	284	Right-handed alpha
Helix 58	AG4	C	285	288	Right-handed 310
Helix 59	AG5	C	304	326	Right-handed alpha
Helix 60	AG6	C	340	351	Right-handed alpha
Helix 61	AG7	C	365	374	Right-handed alpha
Helix 62	AG8	C	388	393	Right-handed alpha
Helix 63	AG9	C	403	416	Right-handed alpha
Helix 64	AH1	C	418	434	Right-handed alpha
Helix 65	AH2	C	437	449	Right-handed alpha
Helix 66	AH3	D	31	37	Right-handed alpha
Helix 67	AH4	D	52	62	Right-handed alpha
Helix 68	AH5	D	74	82	Right-handed alpha
Helix 69	AH6	D	88	96	Right-handed alpha
Helix 70	AH7	D	107	131	Right-handed alpha
Helix 71	AH8	D	143	146	Right-handed 310
Helix 72	AH9	D	147	156	Right-handed alpha
Helix 73	AI1	D	171	176	Right-handed alpha
Helix 74	AI2	D	179	192	Right-handed alpha
Helix 75	AI3	D	200	212	Right-handed alpha
Helix 76	AI4	D	228	237	Right-handed alpha
Helix 77	AI5	D	238	253	Right-handed alpha
Helix 78	AI6	D	265	268	Right-handed 310
Helix 79	AI7	D	269	284	Right-handed alpha
Helix 80	AI8	D	285	288	Right-handed 310
Helix 81	AI9	D	304	326	Right-handed alpha
Helix 82	AJ1	D	340	351	Right-handed alpha
Helix 83	AJ2	D	365	374	Right-handed alpha
Helix 84	AJ3	D	388	393	Right-handed alpha
Helix 85	AJ4	D	403	417	Right-handed alpha
Helix 86	AJ5	D	418	434	Right-handed alpha
Helix 87	AJ6	D	437	449	Right-handed alpha

There are 12 sheets in PDB entry 5LQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	44	49	parallel
Strand 3	A	2	7	parallel
Strand 4	A	132	141	parallel
Strand 5	A	160	164	parallel
Strand 6	A	195	198	parallel
Strand 7	A	219	222	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	A	24	27	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	291	296	parallel
Strand 3	A	256	259	parallel
Strand 4	A	353	356	parallel
Strand 5	A	379	383	parallel
Strand 6	A	397	399	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	71	first strand
Strand 2	B	44	49	parallel
Strand 3	B	2	7	parallel
Strand 4	B	132	141	parallel
Strand 5	B	160	164	parallel
Strand 6	B	195	198	parallel
Strand 7	B	219	222	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	25	27	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	291	296	parallel
Strand 3	B	256	259	parallel
Strand 4	B	353	356	parallel
Strand 5	B	379	383	parallel
Strand 6	B	397	399	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	71	first strand
Strand 2	C	44	49	parallel
Strand 3	C	2	7	parallel
Strand 4	C	132	141	parallel
Strand 5	C	160	164	parallel
Strand 6	C	195	198	parallel
Strand 7	C	219	222	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	24	26	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	291	296	parallel
Strand 3	C	256	259	parallel
Strand 4	C	353	356	parallel
Strand 5	C	379	383	parallel
Strand 6	C	397	399	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	44	49	parallel
Strand 3	D	2	7	parallel
Strand 4	D	132	141	parallel
Strand 5	D	160	164	parallel
Strand 6	D	195	198	parallel
Strand 7	D	219	222	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	24	26	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	336	first strand
Strand 2	D	291	296	parallel
Strand 3	D	256	259	parallel
Strand 4	D	353	356	parallel
Strand 5	D	379	383	parallel
Strand 6	D	397	399	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LQD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LQD