Analysis of interatomic Contacts of Structural Units in PDB entry:
5LQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LQU entry

There are 2 chains in PDB entry 5LQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3PRO 215
B
 GLY 2PRO 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5LQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 17Right-handed alpha
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
42 58Right-handed alpha
Helix 4
AA4
A
70 78Right-handed alpha
Helix 5
AA5
A
92 107Right-handed alpha
Helix 6
AA6
A
118 123Right-handed alpha
Helix 7
AA7
A
125 131Right-handed alpha
Helix 8
AA8
A
143 145Right-handed 310
Helix 9
AA9
A
146 157Right-handed alpha
Helix 10
AB1
A
176 186Right-handed alpha
Helix 11
AB2
B
4 17Right-handed alpha
Helix 12
AB3
B
21 36Right-handed alpha
Helix 13
AB4
B
42 58Right-handed alpha
Helix 14
AB5
B
70 78Right-handed alpha
Helix 15
AB6
B
92 107Right-handed alpha
Helix 16
AB7
B
118 123Right-handed alpha
Helix 17
AB8
B
125 130Right-handed alpha
Helix 18
AB9
B
143 145Right-handed 310
Helix 19
AC1
B
146 157Right-handed alpha
Helix 20
AC2
B
176 186Right-handed alpha
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There are 2 sheets in PDB entry 5LQU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
85 90parallel
Strand 3
A
61 65parallel
Strand 4
A
135 140parallel
Strand 5
A
160 168parallel
Strand 6
A
204 212anti-parallel
Strand 7
A
189 197anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
85 90parallel
Strand 3
B
61 65parallel
Strand 4
B
135 140parallel
Strand 5
B
160 168parallel
Strand 6
B
204 212anti-parallel
Strand 7
B
189 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il