Analysis of interatomic Contacts of Structural Units in PDB entry:
5LQX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LQX entry

There are 30 chains in PDB entry 5LQX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	UNK 1001	UNK 1030
2	UNK 1001	UNK 1025
3	UNK 1001	UNK 1017
4	UNK 1001	UNK 1027
A	PRO 7	THR 509
B	LYS 5	THR 509
C	SER 12	THR 509
D	ALA 6	ALA 476
E	PRO 8	ALA 476
F	GLY 7	ALA 476
G	ALA 1	SER 267
H	LYS 11	VAL 138
I	SER 1	ASN 60
J	VAL 8	GLU 50
K	LEU 3	GLY 75
L	GLN 2	LEU 72
M	MET 1	LEU 72
N	MET 1	LEU 72
O	MET 1	LEU 73
P	MET 1	TYR 74
Q	MET 1	TYR 74
R	MET 1	LEU 73
S	MET 1	LEU 73
T	GLN 2	LEU 73
U	ILE 6	ILE 194
V	ASP 49	LYS 202
W	LEU 11	UNK 1028
X	UNK 1001	UNK 1021
Y	ILE 119	TYR 250
Z	UNK 1001	UNK 1044

There are186 helices in PDB entry 5LQX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	1001	1030	Right-handed alpha
Helix 2	AA2	2	1002	1025	Right-handed alpha
Helix 3	AA3	3	1002	1016	Right-handed alpha
Helix 4	AA4	4	1002	1026	Right-handed alpha
Helix 5	AA5	A	10	18	Right-handed alpha
Helix 6	AA6	A	102	106	Right-handed 310
Helix 7	AA7	A	177	187	Right-handed alpha
Helix 8	AA8	A	188	193	Right-handed alpha
Helix 9	AA9	A	211	225	Right-handed alpha
Helix 10	AB1	A	241	247	Right-handed alpha
Helix 11	AB2	A	247	261	Right-handed alpha
Helix 12	AB3	A	272	286	Right-handed alpha
Helix 13	AB4	A	299	309	Right-handed alpha
Helix 14	AB5	A	339	348	Right-handed alpha
Helix 15	AB6	A	382	402	Right-handed alpha
Helix 16	AB7	A	403	407	Right-handed 310
Helix 17	AB8	A	408	412	Right-handed 310
Helix 18	AB9	A	413	430	Right-handed alpha
Helix 19	AC1	A	439	452	Right-handed alpha
Helix 20	AC2	A	462	475	Right-handed alpha
Helix 21	AC3	A	478	488	Right-handed alpha
Helix 22	AC4	A	492	507	Right-handed alpha
Helix 23	AC5	B	80	84	Right-handed 310
Helix 24	AC6	B	102	106	Right-handed 310
Helix 25	AC7	B	152	157	Right-handed alpha
Helix 26	AC8	B	176	187	Right-handed alpha
Helix 27	AC9	B	188	193	Right-handed alpha
Helix 28	AD1	B	211	225	Right-handed alpha
Helix 29	AD2	B	241	247	Right-handed alpha
Helix 30	AD3	B	247	261	Right-handed alpha
Helix 31	AD4	B	272	286	Right-handed alpha
Helix 32	AD5	B	299	309	Right-handed alpha
Helix 33	AD6	B	338	346	Right-handed alpha
Helix 34	AD7	B	382	389	Right-handed alpha
Helix 35	AD8	B	391	405	Right-handed alpha
Helix 36	AD9	B	413	430	Right-handed alpha
Helix 37	AE1	B	439	452	Right-handed alpha
Helix 38	AE2	B	462	474	Right-handed alpha
Helix 39	AE3	B	478	488	Right-handed alpha
Helix 40	AE4	B	492	508	Right-handed alpha
Helix 41	AE5	C	13	19	Right-handed alpha
Helix 42	AE6	C	102	106	Right-handed 310
Helix 43	AE7	C	152	157	Right-handed alpha
Helix 44	AE8	C	176	187	Right-handed alpha
Helix 45	AE9	C	188	193	Right-handed alpha
Helix 46	AF1	C	211	224	Right-handed alpha
Helix 47	AF2	C	241	247	Right-handed alpha
Helix 48	AF3	C	247	261	Right-handed alpha
Helix 49	AF4	C	272	286	Right-handed alpha
Helix 50	AF5	C	299	310	Right-handed alpha
Helix 51	AF6	C	338	346	Right-handed alpha
Helix 52	AF7	C	356	362	Right-handed alpha
Helix 53	AF8	C	382	389	Right-handed alpha
Helix 54	AF9	C	391	404	Right-handed alpha
Helix 55	AG1	C	405	408	Right-handed 310
Helix 56	AG2	C	416	430	Right-handed alpha
Helix 57	AG3	C	439	452	Right-handed alpha
Helix 58	AG4	C	462	477	Right-handed alpha
Helix 59	AG5	C	478	488	Right-handed alpha
Helix 60	AG6	C	492	506	Right-handed alpha
Helix 61	AG7	D	89	93	Right-handed 310
Helix 62	AG8	D	164	173	Right-handed alpha
Helix 63	AG9	D	191	204	Right-handed alpha
Helix 64	AH1	D	226	232	Right-handed alpha
Helix 65	AH2	D	232	247	Right-handed alpha
Helix 66	AH3	D	260	269	Right-handed alpha
Helix 67	AH4	D	285	295	Right-handed alpha
Helix 68	AH5	D	326	330	Right-handed 310
Helix 69	AH6	D	337	342	Right-handed alpha
Helix 70	AH7	D	365	390	Right-handed alpha
Helix 71	AH8	D	393	397	Right-handed 310
Helix 72	AH9	D	398	415	Right-handed alpha
Helix 73	AI1	D	422	427	Right-handed alpha
Helix 74	AI2	D	434	446	Right-handed alpha
Helix 75	AI3	D	463	475	Right-handed alpha
Helix 76	AI4	E	89	93	Right-handed 310
Helix 77	AI5	E	163	179	Right-handed alpha
Helix 78	AI6	E	191	204	Right-handed alpha
Helix 79	AI7	E	226	232	Right-handed alpha
Helix 80	AI8	E	232	247	Right-handed alpha
Helix 81	AI9	E	259	272	Right-handed alpha
Helix 82	AJ1	E	285	295	Right-handed alpha
Helix 83	AJ2	E	323	328	Right-handed alpha
Helix 84	AJ3	E	340	344	Right-handed 310
Helix 85	AJ4	E	365	385	Right-handed alpha
Helix 86	AJ5	E	385	393	Right-handed alpha
Helix 87	AJ6	E	398	415	Right-handed alpha
Helix 88	AJ7	E	422	427	Right-handed alpha
Helix 89	AJ8	E	434	448	Right-handed alpha
Helix 90	AJ9	E	463	476	Right-handed alpha
Helix 91	AK1	F	89	93	Right-handed 310
Helix 92	AK2	F	164	173	Right-handed alpha
Helix 93	AK3	F	175	179	Right-handed 310
Helix 94	AK4	F	191	204	Right-handed alpha
Helix 95	AK5	F	226	232	Right-handed alpha
Helix 96	AK6	F	232	247	Right-handed alpha
Helix 97	AK7	F	260	269	Right-handed alpha
Helix 98	AK8	F	285	295	Right-handed alpha
Helix 99	AK9	F	365	385	Right-handed alpha
Helix 100	AL1	F	385	390	Right-handed alpha
Helix 101	AL2	F	393	397	Right-handed 310
Helix 102	AL3	F	398	415	Right-handed alpha
Helix 103	AL4	F	422	427	Right-handed alpha
Helix 104	AL5	F	434	446	Right-handed alpha
Helix 105	AL6	F	463	475	Right-handed alpha
Helix 106	AL7	G	2	48	Right-handed alpha
Helix 107	AL8	G	50	56	Right-handed alpha
Helix 108	AL9	G	80	93	Right-handed alpha
Helix 109	AM1	G	105	113	Right-handed alpha
Helix 110	AM2	G	133	143	Right-handed alpha
Helix 111	AM3	G	175	180	Right-handed alpha
Helix 112	AM4	G	196	266	Right-handed alpha
Helix 113	AM5	H	95	97	Right-handed 310
Helix 114	AM6	H	98	113	Right-handed alpha
Helix 115	AM7	H	119	136	Right-handed alpha
Helix 116	AM8	I	9	24	Right-handed alpha
Helix 117	AM9	J	20	49	Right-handed alpha
Helix 118	AN1	K	4	15	Right-handed alpha
Helix 119	AN2	K	18	38	Right-handed alpha
Helix 120	AN3	K	46	59	Right-handed alpha
Helix 121	AN4	K	59	75	Right-handed alpha
Helix 122	AN5	L	3	14	Right-handed alpha
Helix 123	AN6	L	15	17	Right-handed 310
Helix 124	AN7	L	18	38	Right-handed alpha
Helix 125	AN8	L	46	59	Right-handed alpha
Helix 126	AN9	L	59	71	Right-handed alpha
Helix 127	AO1	M	2	15	Right-handed alpha
Helix 128	AO2	M	18	38	Right-handed alpha
Helix 129	AO3	M	46	59	Right-handed alpha
Helix 130	AO4	M	59	71	Right-handed alpha
Helix 131	AO5	N	2	15	Right-handed alpha
Helix 132	AO6	N	18	37	Right-handed alpha
Helix 133	AO7	N	38	40	Right-handed 310
Helix 134	AO8	N	46	59	Right-handed alpha
Helix 135	AO9	N	59	71	Right-handed alpha
Helix 136	AP1	O	2	15	Right-handed alpha
Helix 137	AP2	O	18	38	Right-handed alpha
Helix 138	AP3	O	47	59	Right-handed alpha
Helix 139	AP4	O	59	72	Right-handed alpha
Helix 140	AP5	P	2	15	Right-handed alpha
Helix 141	AP6	P	18	38	Right-handed alpha
Helix 142	AP7	P	46	59	Right-handed alpha
Helix 143	AP8	P	59	73	Right-handed alpha
Helix 144	AP9	Q	2	15	Right-handed alpha
Helix 145	AQ1	Q	18	37	Right-handed alpha
Helix 146	AQ2	Q	38	40	Right-handed 310
Helix 147	AQ3	Q	46	59	Right-handed alpha
Helix 148	AQ4	Q	59	73	Right-handed alpha
Helix 149	AQ5	R	2	15	Right-handed alpha
Helix 150	AQ6	R	18	38	Right-handed alpha
Helix 151	AQ7	R	46	59	Right-handed alpha
Helix 152	AQ8	R	59	72	Right-handed alpha
Helix 153	AQ9	S	2	15	Right-handed alpha
Helix 154	AR1	S	18	38	Right-handed alpha
Helix 155	AR2	S	46	59	Right-handed alpha
Helix 156	AR3	S	59	72	Right-handed alpha
Helix 157	AR4	T	3	11	Right-handed alpha
Helix 158	AR5	T	13	17	Right-handed 310
Helix 159	AR6	T	18	38	Right-handed alpha
Helix 160	AR7	T	46	59	Right-handed alpha
Helix 161	AR8	T	59	72	Right-handed alpha
Helix 162	AR9	U	17	27	Right-handed alpha
Helix 163	AS1	U	34	46	Right-handed alpha
Helix 164	AS2	U	64	74	Right-handed alpha
Helix 165	AS3	U	85	94	Right-handed alpha
Helix 166	AS4	U	96	98	Right-handed 310
Helix 167	AS5	U	99	114	Right-handed alpha
Helix 168	AS6	U	134	147	Right-handed alpha
Helix 169	AS7	U	181	193	Right-handed alpha
Helix 170	AS8	V	51	75	Right-handed alpha
Helix 171	AS9	V	78	180	Right-handed alpha
Helix 172	AT1	V	183	201	Right-handed alpha
Helix 173	AT2	W	23	25	Right-handed 310
Helix 174	AT3	W	26	47	Right-handed alpha
Helix 175	AT4	W	68	77	Right-handed alpha
Helix 176	AT5	W	90	103	Right-handed alpha
Helix 177	AT6	W	104	126	Right-handed alpha
Helix 178	AT7	W	1006	1026	Right-handed alpha
Helix 179	AT8	X	1005	1011	Right-handed alpha
Helix 180	AT9	X	1014	1021	Right-handed alpha
Helix 181	AU1	Y	120	142	Right-handed alpha
Helix 182	AU2	Y	165	188	Right-handed alpha
Helix 183	AU3	Y	189	198	Right-handed alpha
Helix 184	AU4	Y	212	249	Right-handed alpha
Helix 185	AU5	Z	1002	1019	Right-handed alpha
Helix 186	AU6	Z	1028	1042	Right-handed alpha

There are 30 sheets in PDB entry 5LQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	40	43	anti-parallel
Strand 3	A	73	77	anti-parallel
Strand 4	A	62	68	anti-parallel
Strand 5	A	53	56	anti-parallel
Strand 6	A	91	96	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	127	130	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	231	236	parallel
Strand 3	A	202	208	parallel
Strand 4	A	265	271	parallel
Strand 5	A	322	325	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	350	352	parallel
Strand 3	A	373	374	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	37	first strand
Strand 2	B	40	45	anti-parallel
Strand 3	B	73	77	anti-parallel
Strand 4	B	62	68	anti-parallel
Strand 5	B	53	56	anti-parallel
Strand 6	B	89	96	anti-parallel
Strand 7	B	31	37	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	127	130	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	231	236	parallel
Strand 3	B	201	208	parallel
Strand 4	B	265	271	parallel
Strand 5	B	322	330	parallel
Strand 6	B	169	171	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	161	162	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	373	374	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	37	first strand
Strand 2	C	40	45	anti-parallel
Strand 3	C	73	77	anti-parallel
Strand 4	C	62	68	anti-parallel
Strand 5	C	53	57	anti-parallel
Strand 6	C	90	96	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	127	130	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	231	236	parallel
Strand 3	C	201	208	parallel
Strand 4	C	265	271	parallel
Strand 5	C	322	325	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	171	first strand
Strand 2	C	328	330	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	373	374	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	17	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	59	64	anti-parallel
Strand 4	D	49	53	anti-parallel
Strand 5	D	36	38	anti-parallel
Strand 6	D	76	79	anti-parallel
Strand 7	D	10	17	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	115	117	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	216	219	parallel
Strand 3	D	183	186	parallel
Strand 4	D	252	256	parallel
Strand 5	D	305	309	parallel
Strand 6	D	153	155	parallel
Strand 7	D	332	333	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	148	149	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	17	first strand
Strand 2	E	20	24	anti-parallel
Strand 3	E	59	64	anti-parallel
Strand 4	E	49	54	anti-parallel
Strand 5	E	36	38	anti-parallel
Strand 6	E	76	79	anti-parallel
Strand 7	E	10	17	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	87	first strand
Strand 2	E	115	117	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	216	219	parallel
Strand 3	E	183	186	parallel
Strand 4	E	252	256	parallel
Strand 5	E	305	307	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	135	first strand
Strand 2	E	148	149	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	158	first strand
Strand 2	E	330	336	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	17	first strand
Strand 2	F	20	25	anti-parallel
Strand 3	F	59	64	anti-parallel
Strand 4	F	48	54	anti-parallel
Strand 5	F	36	38	anti-parallel
Strand 6	F	76	79	anti-parallel
Strand 7	F	10	17	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	87	first strand
Strand 2	F	115	117	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	97	first strand
Strand 2	F	216	219	parallel
Strand 3	F	183	186	parallel
Strand 4	F	252	256	parallel
Strand 5	F	305	310	parallel
Strand 6	F	153	156	parallel
Strand 7	F	332	333	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	148	149	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	173	first strand
Strand 2	G	153	156	anti-parallel
Strand 3	G	67	71	parallel
Strand 4	G	100	104	parallel
Strand 5	G	120	123	parallel
Strand 6	I	44	47	anti-parallel
Strand 7	I	53	54	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	41	first strand
Strand 2	H	29	33	anti-parallel
Strand 3	H	56	60	anti-parallel
Strand 4	H	67	71	anti-parallel
Strand 5	H	91	93	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	52	first strand
Strand 2	H	74	79	anti-parallel
Strand 3	H	83	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LQX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LQX