Analysis of interatomic Contacts of Structural Units in PDB entry:
5LRA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LRA entry

There are 2 chains in PDB entry 5LRA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 69THR 969
B
 ILE 69MET 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 5LRA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 85Right-handed alpha
Helix 2
AA2
A
94 125Right-handed alpha
Helix 3
AA3
A
141 150Right-handed alpha
Helix 4
AA4
A
151 162Right-handed alpha
Helix 5
AA5
A
165 171Right-handed alpha
Helix 6
AA6
A
181 197Right-handed alpha
Helix 7
AA7
A
297 301Right-handed 310
Helix 8
AA8
A
302 308Right-handed alpha
Helix 9
AA9
A
310 315Right-handed alpha
Helix 10
AB1
A
315 324Right-handed alpha
Helix 11
AB2
A
334 365Right-handed alpha
Helix 12
AB3
A
369 371Right-handed 310
Helix 13
AB4
A
372 376Right-handed alpha
Helix 14
AB5
A
384 387Right-handed 310
Helix 15
AB6
A
388 400Right-handed alpha
Helix 16
AB7
A
404 415Right-handed alpha
Helix 17
AB8
A
433 440Right-handed alpha
Helix 18
AB9
A
440 461Right-handed alpha
Helix 19
AC1
A
466 478Right-handed alpha
Helix 20
AC2
A
486 491Right-handed alpha
Helix 21
AC3
A
492 494Right-handed 310
Helix 22
AC4
A
555 559Right-handed 310
Helix 23
AC5
A
570 578Right-handed alpha
Helix 24
AC6
A
585 595Right-handed alpha
Helix 25
AC7
A
597 604Right-handed alpha
Helix 26
AC8
A
616 621Right-handed alpha
Helix 27
AC9
A
625 637Right-handed alpha
Helix 28
AD1
A
639 643Right-handed 310
Helix 29
AD2
A
644 655Right-handed 310
Helix 30
AD3
A
657 683Right-handed alpha
Helix 31
AD4
A
705 722Right-handed alpha
Helix 32
AD5
A
724 732Right-handed alpha
Helix 33
AD6
A
747 766Right-handed alpha
Helix 34
AD7
A
770 772Right-handed 310
Helix 35
AD8
A
783 791Right-handed alpha
Helix 36
AD9
A
792 794Right-handed 310
Helix 37
AE1
A
810 818Right-handed alpha
Helix 38
AE2
A
829 838Right-handed alpha
Helix 39
AE3
A
839 842Right-handed 310
Helix 40
AE4
A
848 850Right-handed 310
Helix 41
AE5
A
851 861Right-handed alpha
Helix 42
AE6
A
867 879Right-handed alpha
Helix 43
AE7
A
887 892Right-handed alpha
Helix 44
AE8
A
893 895Right-handed 310
Helix 45
AE9
A
907 928Right-handed alpha
Helix 46
AF1
A
928 943Right-handed alpha
Helix 47
AF2
A
944 946Right-handed 310
Helix 48
AF3
A
947 959Right-handed alpha
Helix 49
AF4
B
70 85Right-handed alpha
Helix 50
AF5
B
94 125Right-handed alpha
Helix 51
AF6
B
141 149Right-handed alpha
Helix 52
AF7
B
151 162Right-handed alpha
Helix 53
AF8
B
165 171Right-handed alpha
Helix 54
AF9
B
181 197Right-handed alpha
Helix 55
AG1
B
297 301Right-handed 310
Helix 56
AG2
B
302 308Right-handed alpha
Helix 57
AG3
B
315 323Right-handed alpha
Helix 58
AG4
B
324 326Right-handed 310
Helix 59
AG5
B
334 365Right-handed alpha
Helix 60
AG6
B
369 371Right-handed 310
Helix 61
AG7
B
372 376Right-handed alpha
Helix 62
AG8
B
388 400Right-handed alpha
Helix 63
AG9
B
404 415Right-handed alpha
Helix 64
AH1
B
424 428Right-handed 310
Helix 65
AH2
B
433 440Right-handed alpha
Helix 66
AH3
B
440 461Right-handed alpha
Helix 67
AH4
B
467 478Right-handed alpha
Helix 68
AH5
B
486 491Right-handed alpha
Helix 69
AH6
B
492 494Right-handed 310
Helix 70
AH7
B
555 559Right-handed 310
Helix 71
AH8
B
570 578Right-handed alpha
Helix 72
AH9
B
585 595Right-handed alpha
Helix 73
AI1
B
597 604Right-handed alpha
Helix 74
AI2
B
616 621Right-handed alpha
Helix 75
AI3
B
625 637Right-handed alpha
Helix 76
AI4
B
639 643Right-handed 310
Helix 77
AI5
B
644 655Right-handed 310
Helix 78
AI6
B
657 684Right-handed alpha
Helix 79
AI7
B
705 722Right-handed alpha
Helix 80
AI8
B
724 732Right-handed alpha
Helix 81
AI9
B
747 766Right-handed alpha
Helix 82
AJ1
B
770 772Right-handed 310
Helix 83
AJ2
B
783 794Right-handed alpha
Helix 84
AJ3
B
810 818Right-handed alpha
Helix 85
AJ4
B
828 838Right-handed alpha
Helix 86
AJ5
B
839 842Right-handed 310
Helix 87
AJ6
B
848 850Right-handed 310
Helix 88
AJ7
B
851 861Right-handed alpha
Helix 89
AJ8
B
867 879Right-handed alpha
Helix 90
AJ9
B
887 893Right-handed alpha
Helix 91
AK1
B
907 928Right-handed alpha
Helix 92
AK2
B
928 942Right-handed alpha
Helix 93
AK3
B
943 946Right-handed 310
Helix 94
AK4
B
947 959Right-handed alpha
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There are 10 sheets in PDB entry 5LRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 249first strand
Strand 2
A
267 279anti-parallel
Strand 3
A
286 295anti-parallel
Strand 4
A
201 206parallel
Strand 5
A
128 132parallel
Strand 6
A
377 382parallel
Strand 7
A
416 419parallel
Strand 8
A
581 583parallel
Strand 9
A
608 610parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
221 225anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
261 264anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
567 569anti-parallel
Strand 3
A
480 481anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
774 779first strand
Strand 2
A
735 740parallel
Strand 3
A
692 697parallel
Strand 4
A
796 799parallel
Strand 5
A
821 824parallel
Strand 6
A
843 844parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 249first strand
Strand 2
B
267 279anti-parallel
Strand 3
B
286 295anti-parallel
Strand 4
B
201 206parallel
Strand 5
B
128 132parallel
Strand 6
B
377 382parallel
Strand 7
B
416 419parallel
Strand 8
B
580 583parallel
Strand 9
B
608 610parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 218first strand
Strand 2
B
221 225anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 256first strand
Strand 2
B
260 264anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 432first strand
Strand 2
B
567 569anti-parallel
Strand 3
B
480 481anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
774 779first strand
Strand 2
B
735 740parallel
Strand 3
B
692 697parallel
Strand 4
B
796 799parallel
Strand 5
B
821 824parallel
Strand 6
B
843 844parallel
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