Analysis of interatomic Contacts of Structural Units in PDB entry:
5LRN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LRN entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5LRN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 217SER 284
A
 ALA 286ARG 541
B
 GLY 217SER 284
B
 ALA 286ARG 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5LRN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 257Right-handed 310
Helix 2
AA2
A
265 269Right-handed 310
Helix 3
AA3
A
284 293Right-handed alpha
Helix 4
AA4
A
302 309Right-handed 310
Helix 5
AA5
A
311 319Right-handed alpha
Helix 6
AA6
A
340 342Right-handed 310
Helix 7
AA7
A
365 371Right-handed 310
Helix 8
AA8
A
372 380Right-handed alpha
Helix 9
AA9
A
398 402Right-handed 310
Helix 10
AB1
A
404 408Right-handed 310
Helix 11
AB2
A
418 422Right-handed 310
Helix 12
AB3
A
423 451Right-handed alpha
Helix 13
AB4
A
472 474Right-handed 310
Helix 14
AB5
A
486 490Right-handed 310
Helix 15
AB6
A
517 526Right-handed alpha
Helix 16
AB7
A
530 534Right-handed 310
Helix 17
AB8
B
249 257Right-handed 310
Helix 18
AB9
B
265 269Right-handed 310
Helix 19
AC1
B
284 293Right-handed alpha
Helix 20
AC2
B
302 309Right-handed 310
Helix 21
AC3
B
311 319Right-handed alpha
Helix 22
AC4
B
340 342Right-handed 310
Helix 23
AC5
B
365 371Right-handed 310
Helix 24
AC6
B
372 380Right-handed alpha
Helix 25
AC7
B
398 402Right-handed 310
Helix 26
AC8
B
404 408Right-handed 310
Helix 27
AC9
B
418 422Right-handed 310
Helix 28
AD1
B
423 451Right-handed alpha
Helix 29
AD2
B
472 474Right-handed 310
Helix 30
AD3
B
486 490Right-handed 310
Helix 31
AD4
B
500 503Right-handed 310
Helix 32
AD5
B
517 526Right-handed alpha
Helix 33
AD6
B
530 534Right-handed 310
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There are 8 sheets in PDB entry 5LRN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
528 529anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
494 498anti-parallel
Strand 3
A
457 464anti-parallel
Strand 4
A
238 245parallel
Strand 5
A
385 390parallel
Strand 6
A
322 327parallel
Strand 7
A
344 346parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
513 514parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
476 477anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
528 529anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 274first strand
Strand 2
B
494 498anti-parallel
Strand 3
B
457 464anti-parallel
Strand 4
B
238 245parallel
Strand 5
B
385 390parallel
Strand 6
B
322 327parallel
Strand 7
B
344 346parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
513 514parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 470first strand
Strand 2
B
476 477anti-parallel
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