Analysis of interatomic Contacts of Structural Units in PDB entry:
5LRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LRV entry

There are 4 chains in PDB entry 5LRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 128PRO 435
B
 MET 1GLY 10
B
 THR 12LEU 71
C
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5LRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 154Right-handed alpha
Helix 2
AA2
A
157 167Right-handed alpha
Helix 3
AA3
A
172 177Right-handed alpha
Helix 4
AA4
A
193 198Right-handed alpha
Helix 5
AA5
A
202 206Right-handed 310
Helix 6
AA6
A
208 223Right-handed alpha
Helix 7
AA7
A
226 243Right-handed alpha
Helix 8
AA8
A
244 246Right-handed 310
Helix 9
AA9
A
250 265Right-handed alpha
Helix 10
AB1
A
295 306Right-handed alpha
Helix 11
AB2
A
341 345Right-handed 310
Helix 12
AB3
A
365 369Right-handed alpha
Helix 13
AB4
A
400 407Right-handed alpha
Helix 14
AB5
A
407 413Right-handed alpha
Helix 15
AB6
A
417 429Right-handed alpha
Helix 16
AB7
B
22 35Right-handed alpha
Helix 17
AB8
B
37 41Right-handed 310
Helix 18
AB9
B
55 60Right-handed 310
Helix 19
AC1
C
22 35Right-handed alpha
Helix 20
AC2
C
37 39Right-handed 310
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There are 4 sheets in PDB entry 5LRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 378first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
431 434anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
359 364anti-parallel
Strand 3
A
350 354anti-parallel
Strand 4
A
310 313parallel
Strand 5
A
333 335anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il