Analysis of interatomic Contacts of Structural Units in PDB entry:
5LRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LRW entry

There are 4 chains in PDB entry 5LRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 128SER 437
B
 MET 1GLY 75
C
 MET 128SER 438
D
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5LRW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 153Right-handed alpha
Helix 2
AA2
A
157 167Right-handed alpha
Helix 3
AA3
A
172 177Right-handed alpha
Helix 4
AA4
A
193 200Right-handed alpha
Helix 5
AA5
A
201 204Right-handed 310
Helix 6
AA6
A
208 223Right-handed alpha
Helix 7
AA7
A
226 244Right-handed alpha
Helix 8
AA8
A
250 289Right-handed alpha
Helix 9
AA9
A
295 307Right-handed alpha
Helix 10
AB1
A
341 345Right-handed 310
Helix 11
AB2
A
365 369Right-handed alpha
Helix 12
AB3
A
394 398Right-handed 310
Helix 13
AB4
A
412 429Right-handed alpha
Helix 14
AB5
B
22 35Right-handed alpha
Helix 15
AB6
B
37 39Right-handed 310
Helix 16
AB7
B
56 60Right-handed 310
Helix 17
AB8
C
143 153Right-handed alpha
Helix 18
AB9
C
157 167Right-handed alpha
Helix 19
AC1
C
172 177Right-handed alpha
Helix 20
AC2
C
193 200Right-handed alpha
Helix 21
AC3
C
201 204Right-handed 310
Helix 22
AC4
C
208 223Right-handed alpha
Helix 23
AC5
C
226 245Right-handed alpha
Helix 24
AC6
C
250 289Right-handed alpha
Helix 25
AC7
C
295 307Right-handed alpha
Helix 26
AC8
C
341 345Right-handed 310
Helix 27
AC9
C
365 369Right-handed alpha
Helix 28
AD1
C
394 398Right-handed 310
Helix 29
AD2
C
413 429Right-handed alpha
Helix 30
AD3
D
22 35Right-handed alpha
Helix 31
AD4
D
37 39Right-handed 310
Helix 32
AD5
D
56 60Right-handed 310
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There are 8 sheets in PDB entry 5LRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 378first strand
Strand 2
A
129 135anti-parallel
Strand 3
A
432 435anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
358 364anti-parallel
Strand 3
A
350 355anti-parallel
Strand 4
A
310 313parallel
Strand 5
A
333 335anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 328anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 378first strand
Strand 2
C
129 135anti-parallel
Strand 3
C
432 435anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 185first strand
Strand 2
C
358 364anti-parallel
Strand 3
C
350 355anti-parallel
Strand 4
C
310 313parallel
Strand 5
C
333 335anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 319first strand
Strand 2
C
325 328anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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