Analysis of interatomic Contacts of Structural Units in PDB entry:
5LRX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LRX entry

There are 8 chains in PDB entry 5LRX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	GLU 358
B	MET 1	GLY 75
C	GLN 4	ASN 359
D	MET 1	GLY 75
E	GLN 4	ASN 102
E	LEU 104	ASN 359
F	GLN 4	ASN 102
F	LEU 104	LEU 120

There are 72 helices in PDB entry 5LRX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	13	Right-handed 310
Helix 2	AA2	A	14	23	Right-handed alpha
Helix 3	AA3	A	24	28	Right-handed alpha
Helix 4	AA4	A	42	46	Right-handed 310
Helix 5	AA5	A	57	69	Right-handed alpha
Helix 6	AA6	A	70	80	Right-handed alpha
Helix 7	AA7	A	102	114	Right-handed alpha
Helix 8	AA8	A	120	133	Right-handed alpha
Helix 9	AA9	A	135	150	Right-handed alpha
Helix 10	AB1	A	151	156	Right-handed alpha
Helix 11	AB2	A	160	176	Right-handed alpha
Helix 12	AB3	A	192	204	Right-handed alpha
Helix 13	AB4	A	239	243	Right-handed 310
Helix 14	AB5	A	292	298	Right-handed alpha
Helix 15	AB6	A	298	307	Right-handed alpha
Helix 16	AB7	A	336	339	Right-handed 310
Helix 17	AB8	A	340	357	Right-handed alpha
Helix 18	AB9	B	22	35	Right-handed alpha
Helix 19	AC1	B	37	39	Right-handed 310
Helix 20	AC2	B	56	60	Right-handed 310
Helix 21	AC3	C	9	13	Right-handed 310
Helix 22	AC4	C	14	28	Right-handed alpha
Helix 23	AC5	C	42	46	Right-handed 310
Helix 24	AC6	C	57	69	Right-handed alpha
Helix 25	AC7	C	70	80	Right-handed alpha
Helix 26	AC8	C	102	114	Right-handed alpha
Helix 27	AC9	C	120	133	Right-handed alpha
Helix 28	AD1	C	135	148	Right-handed alpha
Helix 29	AD2	C	150	155	Right-handed alpha
Helix 30	AD3	C	160	175	Right-handed alpha
Helix 31	AD4	C	192	203	Right-handed alpha
Helix 32	AD5	C	239	243	Right-handed 310
Helix 33	AD6	C	292	298	Right-handed alpha
Helix 34	AD7	C	298	307	Right-handed alpha
Helix 35	AD8	C	336	339	Right-handed 310
Helix 36	AD9	C	340	359	Right-handed alpha
Helix 37	AE1	D	22	35	Right-handed alpha
Helix 38	AE2	D	37	39	Right-handed 310
Helix 39	AE3	D	56	60	Right-handed 310
Helix 40	AE4	E	9	13	Right-handed 310
Helix 41	AE5	E	14	23	Right-handed alpha
Helix 42	AE6	E	25	27	Right-handed 310
Helix 43	AE7	E	42	46	Right-handed 310
Helix 44	AE8	E	57	69	Right-handed alpha
Helix 45	AE9	E	70	80	Right-handed alpha
Helix 46	AF1	E	102	114	Right-handed alpha
Helix 47	AF2	E	120	133	Right-handed alpha
Helix 48	AF3	E	135	148	Right-handed alpha
Helix 49	AF4	E	164	175	Right-handed alpha
Helix 50	AF5	E	192	204	Right-handed alpha
Helix 51	AF6	E	239	243	Right-handed 310
Helix 52	AF7	E	292	298	Right-handed alpha
Helix 53	AF8	E	298	307	Right-handed alpha
Helix 54	AF9	E	317	320	Right-handed 310
Helix 55	AG1	E	336	339	Right-handed 310
Helix 56	AG2	E	340	358	Right-handed alpha
Helix 57	AG3	F	9	13	Right-handed 310
Helix 58	AG4	F	14	28	Right-handed alpha
Helix 59	AG5	F	42	46	Right-handed 310
Helix 60	AG6	F	57	69	Right-handed alpha
Helix 61	AG7	F	70	80	Right-handed alpha
Helix 62	AG8	F	102	114	Right-handed alpha
Helix 63	AG9	F	120	133	Right-handed alpha
Helix 64	AH1	F	135	149	Right-handed alpha
Helix 65	AH2	F	167	175	Right-handed alpha
Helix 66	AH3	F	192	204	Right-handed alpha
Helix 67	AH4	F	239	243	Right-handed 310
Helix 68	AH5	F	292	297	Right-handed alpha
Helix 69	AH6	F	298	307	Right-handed alpha
Helix 70	AH7	F	317	320	Right-handed 310
Helix 71	AH8	F	336	339	Right-handed 310
Helix 72	AH9	F	340	356	Right-handed alpha

There are 24 sheets in PDB entry 5LRX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	39	40	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	256	262	anti-parallel
Strand 3	A	248	253	anti-parallel
Strand 4	A	207	211	parallel
Strand 5	A	231	233	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	223	226	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	321	329	anti-parallel
Strand 3	A	309	316	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	283	285	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	66	71	parallel
Strand 4	B	41	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	39	40	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	256	262	anti-parallel
Strand 3	C	248	253	anti-parallel
Strand 4	C	207	211	parallel
Strand 5	C	231	233	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	225	226	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	323	329	anti-parallel
Strand 3	C	309	314	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	279	first strand
Strand 2	C	282	285	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	30	first strand
Strand 2	E	39	40	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	256	263	parallel
Strand 3	E	92	94	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	256	263	parallel
Strand 3	E	248	253	anti-parallel
Strand 4	E	207	210	parallel
Strand 5	E	231	233	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	216	first strand
Strand 2	E	224	226	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	274	first strand
Strand 2	E	322	329	anti-parallel
Strand 3	E	309	315	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	279	first strand
Strand 2	E	282	285	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	39	40	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	50	first strand
Strand 2	F	257	263	parallel
Strand 3	F	92	94	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	50	first strand
Strand 2	F	257	263	parallel
Strand 3	F	248	252	anti-parallel
Strand 4	F	207	210	parallel
Strand 5	F	231	233	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	214	216	first strand
Strand 2	F	224	226	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	274	first strand
Strand 2	F	322	329	anti-parallel
Strand 3	F	309	315	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	276	279	first strand
Strand 2	F	282	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LRX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LRX