Analysis of interatomic Contacts of Structural Units in PDB entry:
5LS2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LS2 entry

There are 2 chains in PDB entry 5LS2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 27LEU 221
B
 LYS 27GLY 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5LS2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 54Right-handed alpha
Helix 2
AA2
A
62 67Right-handed alpha
Helix 3
AA3
A
95 97Right-handed 310
Helix 4
AA4
A
112 119Right-handed alpha
Helix 5
AA5
A
126 133Right-handed alpha
Helix 6
AA6
A
176 185Right-handed alpha
Helix 7
AA7
A
187 195Right-handed alpha
Helix 8
AA8
B
46 54Right-handed alpha
Helix 9
AA9
B
61 67Right-handed alpha
Helix 10
AB1
B
75 79Right-handed 310
Helix 11
AB2
B
112 119Right-handed alpha
Helix 12
AB3
B
126 133Right-handed alpha
Helix 13
AB4
B
137 141Right-handed 310
Helix 14
AB5
B
176 185Right-handed alpha
Helix 15
AB6
B
187 195Right-handed alpha
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There are 2 sheets in PDB entry 5LS2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 152first strand
Strand 2
A
98 106anti-parallel
Strand 3
A
84 94anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
166 170parallel
Strand 6
A
206 210anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 152first strand
Strand 2
B
98 106anti-parallel
Strand 3
B
84 94anti-parallel
Strand 4
B
32 40anti-parallel
Strand 5
B
166 170parallel
Strand 6
B
206 210anti-parallel
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