Analysis of interatomic Contacts of Structural Units in PDB entry:
5LSB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LSB entry

There are 6 chains in PDB entry 5LSB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 8	GLU 205
B	SER 289	PRO 350
C	GLY 8	GLU 205
D	SER 289	PRO 350
F	GLY 8	GLU 205
H	SER 289	PRO 350

There are 25 helices in PDB entry 5LSB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	30	Right-handed alpha
Helix 2	AA2	A	59	71	Right-handed alpha
Helix 3	AA3	A	120	130	Right-handed alpha
Helix 4	AA4	A	157	169	Right-handed alpha
Helix 5	AA5	A	195	203	Right-handed alpha
Helix 6	AA6	B	295	303	Right-handed alpha
Helix 7	AA7	B	312	320	Right-handed alpha
Helix 8	AA8	B	336	340	Right-handed 310
Helix 9	AA9	C	21	30	Right-handed alpha
Helix 10	AB1	C	59	71	Right-handed alpha
Helix 11	AB2	C	120	130	Right-handed alpha
Helix 12	AB3	C	157	169	Right-handed alpha
Helix 13	AB4	C	195	203	Right-handed alpha
Helix 14	AB5	D	295	303	Right-handed alpha
Helix 15	AB6	D	312	320	Right-handed alpha
Helix 16	AB7	D	336	340	Right-handed 310
Helix 17	AB8	F	21	30	Right-handed alpha
Helix 18	AB9	F	59	71	Right-handed alpha
Helix 19	AC1	F	120	130	Right-handed alpha
Helix 20	AC2	F	157	169	Right-handed alpha
Helix 21	AC3	F	191	193	Right-handed 310
Helix 22	AC4	F	194	203	Right-handed alpha
Helix 23	AC5	H	295	303	Right-handed alpha
Helix 24	AC6	H	312	320	Right-handed alpha
Helix 25	AC7	H	336	340	Right-handed 310

There are 16 sheets in PDB entry 5LSB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	10	14	anti-parallel
Strand 4	A	82	85	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	48	49	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	79	80	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	143	first strand
Strand 2	A	148	155	anti-parallel
Strand 3	A	108	113	anti-parallel
Strand 4	A	176	182	anti-parallel
Strand 5	A	171	173	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	346	348	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	39	first strand
Strand 2	C	53	57	anti-parallel
Strand 3	C	10	14	anti-parallel
Strand 4	C	82	85	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	48	49	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	79	80	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	148	155	anti-parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	179	182	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	176	177	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	330	first strand
Strand 2	D	346	348	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	39	first strand
Strand 2	F	53	57	anti-parallel
Strand 3	F	10	14	anti-parallel
Strand 4	F	82	85	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	48	49	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	79	80	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	143	first strand
Strand 2	F	148	155	anti-parallel
Strand 3	F	108	113	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	F	171	173	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	328	330	first strand
Strand 2	H	346	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LSB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LSB