Analysis of interatomic Contacts of Structural Units in PDB entry:
5LSF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LSF entry

There are 4 chains in PDB entry 5LSF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 243
B
 GLU 3THR 241
C
 ASP 1PRO 273
D
 ASP 1VAL 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5LSF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
81 84Right-handed 310
Helix 5
AA5
A
85 92Right-handed alpha
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
187 192Right-handed alpha
Helix 9
AA9
A
193 195Right-handed 310
Helix 10
AB1
A
233 238Right-handed 310
Helix 11
AB2
B
44 49Right-handed alpha
Helix 12
AB3
B
56 61Right-handed alpha
Helix 13
AB4
B
88 93Right-handed alpha
Helix 14
AB5
B
98 105Right-handed 310
Helix 15
AB6
B
147 154Right-handed alpha
Helix 16
AB7
C
53 59Right-handed alpha
Helix 17
AB8
C
100 107Right-handed alpha
Helix 18
AB9
C
146 152Right-handed alpha
Helix 19
AC1
C
196 202Right-handed alpha
Helix 20
AC2
D
22 26Right-handed 310
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There are 11 sheets in PDB entry 5LSF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 49first strand
Strand 2
A
207 224anti-parallel
Strand 3
A
94 108anti-parallel
Strand 4
A
175 176anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 49first strand
Strand 2
A
207 224anti-parallel
Strand 3
A
94 108anti-parallel
Strand 4
A
161 166anti-parallel
Strand 5
C
29 30parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
197 202anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
A
151 154anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 97first strand
Strand 2
A
230 232anti-parallel
Strand 3
C
255 256anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
24 28anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
166 171parallel
Strand 3
B
107 121anti-parallel
Strand 4
B
217 234anti-parallel
Strand 5
B
69 72anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
217 234anti-parallel
Strand 3
B
107 121anti-parallel
Strand 4
B
180 181anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 87first strand
Strand 2
B
196 209anti-parallel
Strand 3
B
127 136anti-parallel
Strand 4
B
156 160anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 70first strand
Strand 2
C
231 240anti-parallel
Strand 3
C
116 123anti-parallel
Strand 4
C
165 170anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 83first strand
Strand 2
C
213 220anti-parallel
Strand 3
C
130 137anti-parallel
Strand 4
C
154 160anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
109 113anti-parallel
Strand 3
C
245 249anti-parallel
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