Analysis of interatomic Contacts of Structural Units in PDB entry:
5LSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LSJ entry

There are 10 chains in PDB entry 5LSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 200
B
 THR 31GLU 203
D
 SER 203SER 317
N
 MET 104VAL 204
P
 LEU 6CYS 18
C
 SER 2LYS 200
E
 THR 31GLU 203
F
 SER 203SER 317
G
 PHE 103VAL 204
Q
 LEU 6PRO 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5LSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 48Right-handed alpha
Helix 2
AA2
A
56 90Right-handed alpha
Helix 3
AA3
A
99 107Right-handed 310
Helix 4
AA4
A
110 168Right-handed alpha
Helix 5
AA5
A
173 198Right-handed alpha
Helix 6
AA6
B
34 52Right-handed alpha
Helix 7
AA7
B
55 62Right-handed alpha
Helix 8
AA8
B
62 67Right-handed alpha
Helix 9
AA9
B
69 97Right-handed alpha
Helix 10
AB1
B
100 116Right-handed alpha
Helix 11
AB2
B
128 189Right-handed alpha
Helix 12
AB3
B
189 201Right-handed alpha
Helix 13
AB4
D
204 243Right-handed alpha
Helix 14
AB5
D
264 270Right-handed alpha
Helix 15
AB6
D
273 315Right-handed alpha
Helix 16
AB7
N
105 150Right-handed alpha
Helix 17
AB8
N
169 201Right-handed alpha
Helix 18
AB9
C
16 49Right-handed alpha
Helix 19
AC1
C
57 90Right-handed alpha
Helix 20
AC2
C
99 103Right-handed 310
Helix 21
AC3
C
110 168Right-handed alpha
Helix 22
AC4
C
173 199Right-handed alpha
Helix 23
AC5
E
34 52Right-handed alpha
Helix 24
AC6
E
54 60Right-handed alpha
Helix 25
AC7
E
62 67Right-handed alpha
Helix 26
AC8
E
69 97Right-handed alpha
Helix 27
AC9
E
100 116Right-handed alpha
Helix 28
AD1
E
128 189Right-handed alpha
Helix 29
AD2
E
189 201Right-handed alpha
Helix 30
AD3
F
204 243Right-handed alpha
Helix 31
AD4
F
264 270Right-handed alpha
Helix 32
AD5
F
273 315Right-handed alpha
Helix 33
AD6
G
104 150Right-handed alpha
Helix 34
AD7
G
169 201Right-handed alpha
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There are no sheets in PDB entry 5LSJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il