Analysis of interatomic Contacts of Structural Units in PDB entry:
5LSM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LSM entry

There are 8 chains in PDB entry 5LSM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PRO 348
B	CYS 3	VAL 344
C	CYS 3	GLU 353
D	MET 1	VAL 344
E	MET 1	LEU 347
F	CYS 3	SER 349
G	CYS 3	LEU 347
H	PRO 2	PHE 343

There are134 helices in PDB entry 5LSM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	10	Right-handed alpha
Helix 2	AA2	A	25	36	Right-handed alpha
Helix 3	AA3	A	47	60	Right-handed alpha
Helix 4	AA4	A	79	90	Right-handed alpha
Helix 5	AA5	A	90	98	Right-handed alpha
Helix 6	AA6	A	114	125	Right-handed alpha
Helix 7	AA7	A	137	146	Right-handed alpha
Helix 8	AA8	A	157	167	Right-handed alpha
Helix 9	AA9	A	190	194	Right-handed 310
Helix 10	AB1	A	196	208	Right-handed alpha
Helix 11	AB2	A	220	230	Right-handed alpha
Helix 12	AB3	A	238	242	Right-handed 310
Helix 13	AB4	A	250	259	Right-handed alpha
Helix 14	AB5	A	260	263	Right-handed 310
Helix 15	AB6	A	281	288	Right-handed alpha
Helix 16	AB7	A	300	314	Right-handed alpha
Helix 17	AB8	A	335	343	Right-handed alpha
Helix 18	AB9	B	4	9	Right-handed alpha
Helix 19	AC1	B	25	35	Right-handed alpha
Helix 20	AC2	B	47	60	Right-handed alpha
Helix 21	AC3	B	83	90	Right-handed alpha
Helix 22	AC4	B	90	97	Right-handed alpha
Helix 23	AC5	B	114	123	Right-handed alpha
Helix 24	AC6	B	137	147	Right-handed alpha
Helix 25	AC7	B	157	167	Right-handed alpha
Helix 26	AC8	B	190	194	Right-handed 310
Helix 27	AC9	B	196	208	Right-handed alpha
Helix 28	AD1	B	220	230	Right-handed alpha
Helix 29	AD2	B	238	242	Right-handed 310
Helix 30	AD3	B	250	259	Right-handed alpha
Helix 31	AD4	B	260	263	Right-handed 310
Helix 32	AD5	B	281	288	Right-handed alpha
Helix 33	AD6	B	300	314	Right-handed alpha
Helix 34	AD7	B	335	343	Right-handed alpha
Helix 35	AD8	C	25	36	Right-handed alpha
Helix 36	AD9	C	47	60	Right-handed alpha
Helix 37	AE1	C	79	98	Right-handed alpha
Helix 38	AE2	C	114	123	Right-handed alpha
Helix 39	AE3	C	137	147	Right-handed alpha
Helix 40	AE4	C	157	168	Right-handed alpha
Helix 41	AE5	C	190	194	Right-handed 310
Helix 42	AE6	C	196	208	Right-handed alpha
Helix 43	AE7	C	220	230	Right-handed alpha
Helix 44	AE8	C	238	242	Right-handed 310
Helix 45	AE9	C	250	259	Right-handed alpha
Helix 46	AF1	C	260	263	Right-handed 310
Helix 47	AF2	C	281	288	Right-handed alpha
Helix 48	AF3	C	300	314	Right-handed alpha
Helix 49	AF4	C	335	344	Right-handed alpha
Helix 50	AF5	D	3	10	Right-handed alpha
Helix 51	AF6	D	25	34	Right-handed alpha
Helix 52	AF7	D	47	62	Right-handed alpha
Helix 53	AF8	D	80	90	Right-handed alpha
Helix 54	AF9	D	90	97	Right-handed alpha
Helix 55	AG1	D	114	125	Right-handed alpha
Helix 56	AG2	D	137	147	Right-handed alpha
Helix 57	AG3	D	157	167	Right-handed alpha
Helix 58	AG4	D	190	194	Right-handed 310
Helix 59	AG5	D	196	208	Right-handed alpha
Helix 60	AG6	D	220	230	Right-handed alpha
Helix 61	AG7	D	238	242	Right-handed 310
Helix 62	AG8	D	250	258	Right-handed alpha
Helix 63	AG9	D	259	263	Right-handed 310
Helix 64	AH1	D	281	288	Right-handed alpha
Helix 65	AH2	D	300	313	Right-handed alpha
Helix 66	AH3	D	327	331	Right-handed 310
Helix 67	AH4	D	335	344	Right-handed alpha
Helix 68	AH5	E	2	9	Right-handed alpha
Helix 69	AH6	E	25	35	Right-handed alpha
Helix 70	AH7	E	47	60	Right-handed alpha
Helix 71	AH8	E	79	90	Right-handed alpha
Helix 72	AH9	E	90	97	Right-handed alpha
Helix 73	AI1	E	114	123	Right-handed alpha
Helix 74	AI2	E	137	146	Right-handed alpha
Helix 75	AI3	E	157	167	Right-handed alpha
Helix 76	AI4	E	190	194	Right-handed 310
Helix 77	AI5	E	196	208	Right-handed alpha
Helix 78	AI6	E	220	230	Right-handed alpha
Helix 79	AI7	E	238	242	Right-handed 310
Helix 80	AI8	E	250	258	Right-handed alpha
Helix 81	AI9	E	259	263	Right-handed 310
Helix 82	AJ1	E	281	288	Right-handed alpha
Helix 83	AJ2	E	300	314	Right-handed alpha
Helix 84	AJ3	E	335	343	Right-handed alpha
Helix 85	AJ4	F	4	10	Right-handed alpha
Helix 86	AJ5	F	25	36	Right-handed alpha
Helix 87	AJ6	F	47	62	Right-handed alpha
Helix 88	AJ7	F	79	90	Right-handed alpha
Helix 89	AJ8	F	90	97	Right-handed alpha
Helix 90	AJ9	F	114	125	Right-handed alpha
Helix 91	AK1	F	137	147	Right-handed alpha
Helix 92	AK2	F	157	167	Right-handed alpha
Helix 93	AK3	F	190	194	Right-handed 310
Helix 94	AK4	F	196	208	Right-handed alpha
Helix 95	AK5	F	220	230	Right-handed alpha
Helix 96	AK6	F	238	242	Right-handed 310
Helix 97	AK7	F	250	258	Right-handed alpha
Helix 98	AK8	F	259	263	Right-handed 310
Helix 99	AK9	F	281	288	Right-handed alpha
Helix 100	AL1	F	300	314	Right-handed alpha
Helix 101	AL2	F	335	343	Right-handed alpha
Helix 102	AL3	G	25	35	Right-handed alpha
Helix 103	AL4	G	47	62	Right-handed alpha
Helix 104	AL5	G	83	90	Right-handed alpha
Helix 105	AL6	G	90	98	Right-handed alpha
Helix 106	AL7	G	114	125	Right-handed alpha
Helix 107	AL8	G	137	147	Right-handed alpha
Helix 108	AL9	G	157	167	Right-handed alpha
Helix 109	AM1	G	190	194	Right-handed 310
Helix 110	AM2	G	196	208	Right-handed alpha
Helix 111	AM3	G	220	230	Right-handed alpha
Helix 112	AM4	G	238	242	Right-handed 310
Helix 113	AM5	G	250	259	Right-handed alpha
Helix 114	AM6	G	260	263	Right-handed 310
Helix 115	AM7	G	281	288	Right-handed alpha
Helix 116	AM8	G	300	313	Right-handed alpha
Helix 117	AM9	G	335	343	Right-handed alpha
Helix 118	AN1	H	3	10	Right-handed alpha
Helix 119	AN2	H	25	35	Right-handed alpha
Helix 120	AN3	H	47	60	Right-handed alpha
Helix 121	AN4	H	79	90	Right-handed alpha
Helix 122	AN5	H	90	97	Right-handed alpha
Helix 123	AN6	H	114	123	Right-handed alpha
Helix 124	AN7	H	137	146	Right-handed alpha
Helix 125	AN8	H	157	167	Right-handed alpha
Helix 126	AN9	H	190	194	Right-handed 310
Helix 127	AO1	H	196	208	Right-handed alpha
Helix 128	AO2	H	220	230	Right-handed alpha
Helix 129	AO3	H	238	242	Right-handed 310
Helix 130	AO4	H	250	259	Right-handed alpha
Helix 131	AO5	H	260	263	Right-handed 310
Helix 132	AO6	H	281	288	Right-handed alpha
Helix 133	AO7	H	299	314	Right-handed alpha
Helix 134	AO8	H	335	343	Right-handed alpha

There are 16 sheets in PDB entry 5LSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	234	237	parallel
Strand 3	A	212	215	parallel
Strand 4	A	171	175	parallel
Strand 5	A	150	155	parallel
Strand 6	A	128	132	parallel
Strand 7	A	66	71	parallel
Strand 8	A	39	42	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	276	279	anti-parallel
Strand 3	A	265	268	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	234	237	parallel
Strand 3	B	212	215	parallel
Strand 4	B	171	175	parallel
Strand 5	B	150	155	parallel
Strand 6	B	128	132	parallel
Strand 7	B	66	71	parallel
Strand 8	B	39	42	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	276	279	anti-parallel
Strand 3	B	265	268	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	234	237	parallel
Strand 3	C	212	215	parallel
Strand 4	C	171	175	parallel
Strand 5	C	150	155	parallel
Strand 6	C	128	132	parallel
Strand 7	C	66	71	parallel
Strand 8	C	39	42	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	C	276	279	anti-parallel
Strand 3	C	265	268	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	234	237	parallel
Strand 3	D	212	214	parallel
Strand 4	D	171	174	parallel
Strand 5	D	150	155	parallel
Strand 6	D	128	132	parallel
Strand 7	D	66	71	parallel
Strand 8	D	39	42	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	182	first strand
Strand 2	D	276	279	anti-parallel
Strand 3	D	265	268	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	234	237	parallel
Strand 3	E	212	215	parallel
Strand 4	E	171	175	parallel
Strand 5	E	150	155	parallel
Strand 6	E	128	132	parallel
Strand 7	E	66	71	parallel
Strand 8	E	39	42	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	182	first strand
Strand 2	E	276	279	anti-parallel
Strand 3	E	265	268	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	17	first strand
Strand 2	F	234	237	parallel
Strand 3	F	212	215	parallel
Strand 4	F	171	175	parallel
Strand 5	F	150	155	parallel
Strand 6	F	128	132	parallel
Strand 7	F	66	71	parallel
Strand 8	F	39	42	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	182	first strand
Strand 2	F	276	279	anti-parallel
Strand 3	F	265	268	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	234	237	parallel
Strand 3	G	212	215	parallel
Strand 4	G	171	175	parallel
Strand 5	G	150	155	parallel
Strand 6	G	128	132	parallel
Strand 7	G	66	71	parallel
Strand 8	G	39	42	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	182	first strand
Strand 2	G	276	279	anti-parallel
Strand 3	G	265	268	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	17	first strand
Strand 2	H	234	237	parallel
Strand 3	H	212	215	parallel
Strand 4	H	171	175	parallel
Strand 5	H	150	155	parallel
Strand 6	H	128	132	parallel
Strand 7	H	66	71	parallel
Strand 8	H	39	42	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	181	182	first strand
Strand 2	H	276	279	anti-parallel
Strand 3	H	265	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LSM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LSM