Analysis of interatomic Contacts of Structural Units in PDB entry:
5LSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LSP entry

There are 8 chains in PDB entry 5LSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 519	GLU 740
H	GLN 1	LYS 221
L	ASP 1	GLY 212
P	GLY 519	GLU 740
S	GLN 1	LYS 221
T	ASP 1	GLY 212
X	THR 23	ALA 31
Y	THR 23	LYS 32

There are 27 helices in PDB entry 5LSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	519	523	Right-handed 310
Helix 2	AA2	A	525	530	Right-handed alpha
Helix 3	AA3	A	533	537	Right-handed 310
Helix 4	AA4	A	547	551	Right-handed 310
Helix 5	AA5	A	614	617	Right-handed 310
Helix 6	AA6	H	28	32	Right-handed 310
Helix 7	AA7	H	62	65	Right-handed 310
Helix 8	AA8	H	87	91	Right-handed 310
Helix 9	AA9	H	194	197	Right-handed 310
Helix 10	AB1	H	208	211	Right-handed 310
Helix 11	AB2	L	79	83	Right-handed 310
Helix 12	AB3	L	121	126	Right-handed alpha
Helix 13	AB4	L	183	188	Right-handed alpha
Helix 14	AB5	P	519	523	Right-handed 310
Helix 15	AB6	P	525	531	Right-handed alpha
Helix 16	AB7	P	533	537	Right-handed 310
Helix 17	AB8	P	547	551	Right-handed 310
Helix 18	AB9	P	614	617	Right-handed 310
Helix 19	AC1	S	28	32	Right-handed 310
Helix 20	AC2	S	87	91	Right-handed 310
Helix 21	AC3	S	161	165	Right-handed 310
Helix 22	AC4	S	208	211	Right-handed 310
Helix 23	AC5	T	79	83	Right-handed 310
Helix 24	AC6	T	121	126	Right-handed alpha
Helix 25	AC7	T	183	188	Right-handed alpha
Helix 26	AC8	X	24	31	Right-handed alpha
Helix 27	AC9	Y	24	32	Right-handed alpha

There are 34 sheets in PDB entry 5LSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	541	first strand
Strand 2	A	544	546	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	569	first strand
Strand 2	A	580	586	anti-parallel
Strand 3	A	621	625	anti-parallel
Strand 4	A	611	612	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	574	first strand
Strand 2	A	646	655	parallel
Strand 3	A	633	641	anti-parallel
Strand 4	A	602	605	anti-parallel
Strand 5	A	608	609	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	595	597	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	663	first strand
Strand 2	A	674	680	anti-parallel
Strand 3	A	706	710	anti-parallel
Strand 4	A	698	702	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	668	first strand
Strand 2	A	729	739	parallel
Strand 3	A	719	726	anti-parallel
Strand 4	A	688	692	anti-parallel
Strand 5	A	695	696	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	107	110	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	183	192	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	183	192	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	201	207	first strand
Strand 2	H	212	218	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	160	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	544	546	first strand
Strand 2	P	539	541	anti-parallel
Strand 3	P	556	557	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	564	569	first strand
Strand 2	P	580	586	anti-parallel
Strand 3	P	621	625	anti-parallel
Strand 4	P	611	612	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	572	574	first strand
Strand 2	P	646	655	parallel
Strand 3	P	633	641	anti-parallel
Strand 4	P	602	605	anti-parallel
Strand 5	P	608	609	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	590	592	first strand
Strand 2	P	595	597	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	658	663	first strand
Strand 2	P	674	680	anti-parallel
Strand 3	P	706	710	anti-parallel
Strand 4	P	698	702	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	666	668	first strand
Strand 2	P	729	739	parallel
Strand 3	P	719	726	anti-parallel
Strand 4	P	688	692	anti-parallel
Strand 5	P	695	696	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	6	first strand
Strand 2	S	19	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	114	118	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	34	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	114	118	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	107	110	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	127	131	first strand
Strand 2	S	142	152	anti-parallel
Strand 3	S	183	192	anti-parallel
Strand 4	S	170	172	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	127	131	first strand
Strand 2	S	142	152	anti-parallel
Strand 3	S	183	192	anti-parallel
Strand 4	S	176	177	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	205	207	first strand
Strand 2	S	212	214	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	7	first strand
Strand 2	T	19	25	anti-parallel
Strand 3	T	70	75	anti-parallel
Strand 4	T	62	67	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	14	first strand
Strand 2	T	102	107	parallel
Strand 3	T	84	90	anti-parallel
Strand 4	T	33	38	anti-parallel
Strand 5	T	45	49	anti-parallel
Strand 6	T	53	54	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	14	first strand
Strand 2	T	102	107	parallel
Strand 3	T	84	90	anti-parallel
Strand 4	T	97	98	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	114	118	first strand
Strand 2	T	129	139	anti-parallel
Strand 3	T	173	182	anti-parallel
Strand 4	T	159	160	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	153	154	first strand
Strand 2	T	145	150	anti-parallel
Strand 3	T	192	197	anti-parallel
Strand 4	T	205	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LSP