Analysis of interatomic Contacts of Structural Units in PDB entry:
5LST


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LST entry

There is 1 chain in PDB entry 5LST (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 449GLU 1111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 5LST. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
457 461Right-handed 310
Helix 2
AA2
A
466 477Right-handed alpha
Helix 3
AA3
A
484 493Right-handed alpha
Helix 4
AA4
A
509 523Right-handed alpha
Helix 5
AA5
A
532 537Right-handed alpha
Helix 6
AA6
A
558 571Right-handed alpha
Helix 7
AA7
A
580 586Right-handed alpha
Helix 8
AA8
A
607 611Right-handed 310
Helix 9
AA9
A
619 631Right-handed alpha
Helix 10
AB1
A
645 656Right-handed alpha
Helix 11
AB2
A
683 694Right-handed alpha
Helix 12
AB3
A
709 724Right-handed alpha
Helix 13
AB4
A
749 762Right-handed alpha
Helix 14
AB5
A
794 803Right-handed alpha
Helix 15
AB6
A
822 836Right-handed alpha
Helix 16
AB7
A
838 850Right-handed alpha
Helix 17
AB8
A
906 914Right-handed alpha
Helix 18
AB9
A
916 930Right-handed alpha
Helix 19
AC1
A
951 958Right-handed alpha
Helix 20
AC2
A
963 973Right-handed alpha
Helix 21
AC3
A
989 997Right-handed alpha
Helix 22
AC4
A
999 1009Right-handed alpha
Helix 23
AC5
A
1044 1079Right-handed alpha
Helix 24
AC6
A
1085 1089Right-handed 310
Helix 25
AC7
A
1093 1109Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5LST. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
637 641parallel
Strand 3
A
599 605parallel
Strand 4
A
526 530parallel
Strand 5
A
576 579parallel
Strand 6
A
548 551parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 679first strand
Strand 2
A
812 817parallel
Strand 3
A
785 789parallel
Strand 4
A
703 707parallel
Strand 5
A
765 771parallel
Strand 6
A
739 744parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
900 905first strand
Strand 2
A
1027 1039anti-parallel
Strand 3
A
936 948anti-parallel
Strand 4
A
985 988anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1012 1013first strand
Strand 2
A
1022 1023anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il