Analysis of interatomic Contacts of Structural Units in PDB entry:
5LT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LT1 entry

There are 2 chains in PDB entry 5LT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7THR 324
B
 ASP 3ILE 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 5LT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 26Right-handed alpha
Helix 2
AA2
A
57 66Right-handed alpha
Helix 3
AA3
A
66 75Right-handed alpha
Helix 4
AA4
A
90 96Right-handed alpha
Helix 5
AA5
A
106 122Right-handed alpha
Helix 6
AA6
A
175 190Right-handed alpha
Helix 7
AA7
A
196 203Right-handed alpha
Helix 8
AA8
A
249 270Right-handed alpha
Helix 9
AA9
A
276 279Right-handed 310
Helix 10
AB1
A
280 286Right-handed alpha
Helix 11
AB2
A
305 307Right-handed 310
Helix 12
AB3
A
308 321Right-handed alpha
Helix 13
AB4
B
19 26Right-handed alpha
Helix 14
AB5
B
57 66Right-handed alpha
Helix 15
AB6
B
66 74Right-handed alpha
Helix 16
AB7
B
90 96Right-handed alpha
Helix 17
AB8
B
106 122Right-handed alpha
Helix 18
AB9
B
175 190Right-handed alpha
Helix 19
AC1
B
196 203Right-handed alpha
Helix 20
AC2
B
249 270Right-handed alpha
Helix 21
AC3
B
276 279Right-handed 310
Helix 22
AC4
B
280 286Right-handed alpha
Helix 23
AC5
B
287 290Right-handed 310
Helix 24
AC6
B
305 307Right-handed 310
Helix 25
AC7
B
308 321Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5LT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
9 15parallel
Strand 3
A
295 302parallel
Strand 4
A
79 84parallel
Strand 5
A
221 231parallel
Strand 6
A
205 216anti-parallel
Strand 7
A
126 138anti-parallel
Strand 8
A
141 144anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
9 15parallel
Strand 3
A
295 302parallel
Strand 4
A
79 84parallel
Strand 5
A
221 231parallel
Strand 6
A
205 216anti-parallel
Strand 7
A
126 138anti-parallel
Strand 8
A
171 172anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
38 41anti-parallel
Strand 3
A
44 47anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
163 165anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
10 15parallel
Strand 3
B
295 302parallel
Strand 4
B
79 84parallel
Strand 5
B
222 231parallel
Strand 6
B
205 216anti-parallel
Strand 7
B
126 138anti-parallel
Strand 8
B
141 144anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
10 15parallel
Strand 3
B
295 302parallel
Strand 4
B
79 84parallel
Strand 5
B
222 231parallel
Strand 6
B
205 216anti-parallel
Strand 7
B
126 138anti-parallel
Strand 8
B
171 173anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
38 41anti-parallel
Strand 3
B
44 47anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
163 165anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il