Analysis of interatomic Contacts of Structural Units in PDB entry:
5LT2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LT2 entry

There are 5 chains in PDB entry 5LT2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 6	THR 324
B	GLU 6	THR 324
C	ALA 5	THR 324
D	ALA 5	ILE 325
E	SER 7	ARG 110

There are 62 helices in PDB entry 5LT2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	24	Right-handed alpha
Helix 2	AA2	A	57	66	Right-handed alpha
Helix 3	AA3	A	66	75	Right-handed alpha
Helix 4	AA4	A	90	96	Right-handed alpha
Helix 5	AA5	A	106	123	Right-handed alpha
Helix 6	AA6	A	175	188	Right-handed alpha
Helix 7	AA7	A	245	270	Right-handed alpha
Helix 8	AA8	A	276	279	Right-handed 310
Helix 9	AA9	A	280	286	Right-handed alpha
Helix 10	AB1	A	305	307	Right-handed 310
Helix 11	AB2	A	308	321	Right-handed alpha
Helix 12	AB3	B	19	24	Right-handed alpha
Helix 13	AB4	B	57	66	Right-handed alpha
Helix 14	AB5	B	66	74	Right-handed alpha
Helix 15	AB6	B	90	96	Right-handed alpha
Helix 16	AB7	B	106	123	Right-handed alpha
Helix 17	AB8	B	175	188	Right-handed alpha
Helix 18	AB9	B	245	270	Right-handed alpha
Helix 19	AC1	B	276	279	Right-handed 310
Helix 20	AC2	B	280	286	Right-handed alpha
Helix 21	AC3	B	305	307	Right-handed 310
Helix 22	AC4	B	308	321	Right-handed alpha
Helix 23	AC5	C	57	66	Right-handed alpha
Helix 24	AC6	C	66	75	Right-handed alpha
Helix 25	AC7	C	90	96	Right-handed alpha
Helix 26	AC8	C	106	122	Right-handed alpha
Helix 27	AC9	C	175	188	Right-handed alpha
Helix 28	AD1	C	246	270	Right-handed alpha
Helix 29	AD2	C	276	279	Right-handed 310
Helix 30	AD3	C	280	286	Right-handed alpha
Helix 31	AD4	C	308	321	Right-handed alpha
Helix 32	AD5	D	22	26	Right-handed 310
Helix 33	AD6	D	57	66	Right-handed alpha
Helix 34	AD7	D	66	74	Right-handed alpha
Helix 35	AD8	D	90	96	Right-handed alpha
Helix 36	AD9	D	106	122	Right-handed alpha
Helix 37	AE1	D	175	190	Right-handed alpha
Helix 38	AE2	D	245	270	Right-handed alpha
Helix 39	AE3	D	276	279	Right-handed 310
Helix 40	AE4	D	280	286	Right-handed alpha
Helix 41	AE5	D	305	307	Right-handed 310
Helix 42	AE6	D	308	321	Right-handed alpha
Helix 43	AE7	E	57	66	Right-handed alpha
Helix 44	AE8	E	66	75	Right-handed alpha
Helix 45	AE9	E	90	96	Right-handed alpha
Helix 46	AF1	E	106	122	Right-handed alpha
Helix 47	AF2	E	175	188	Right-handed alpha
Helix 48	AF3	E	245	270	Right-handed alpha
Helix 49	AF4	E	276	279	Right-handed 310
Helix 50	AF5	E	280	286	Right-handed alpha
Helix 51	AF6	E	308	321	Right-handed alpha
Helix 52	AF7	K	22	26	Right-handed 310
Helix 53	AF8	K	57	66	Right-handed alpha
Helix 54	AF9	K	66	75	Right-handed alpha
Helix 55	AG1	K	90	96	Right-handed alpha
Helix 56	AG2	K	106	123	Right-handed alpha
Helix 57	AG3	K	175	188	Right-handed alpha
Helix 58	AG4	K	246	270	Right-handed alpha
Helix 59	AG5	K	276	279	Right-handed 310
Helix 60	AG6	K	280	286	Right-handed alpha
Helix 61	AG7	K	305	307	Right-handed 310
Helix 62	AG8	K	308	321	Right-handed alpha

There are 26 sheets in PDB entry 5LT2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	9	15	parallel
Strand 3	A	295	302	parallel
Strand 4	A	79	85	parallel
Strand 5	A	222	232	parallel
Strand 6	A	205	216	anti-parallel
Strand 7	A	126	138	anti-parallel
Strand 8	A	141	144	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	9	15	parallel
Strand 3	A	295	302	parallel
Strand 4	A	79	85	parallel
Strand 5	A	222	232	parallel
Strand 6	A	205	216	anti-parallel
Strand 7	A	126	138	anti-parallel
Strand 8	A	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	38	41	anti-parallel
Strand 3	A	44	47	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	9	15	parallel
Strand 3	B	295	302	parallel
Strand 4	B	79	83	parallel
Strand 5	B	222	231	parallel
Strand 6	B	205	215	anti-parallel
Strand 7	B	127	138	anti-parallel
Strand 8	B	141	144	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	9	15	parallel
Strand 3	B	295	302	parallel
Strand 4	B	79	83	parallel
Strand 5	B	222	231	parallel
Strand 6	B	205	215	anti-parallel
Strand 7	B	127	138	anti-parallel
Strand 8	B	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	44	47	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	163	165	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	9	15	parallel
Strand 3	C	295	302	parallel
Strand 4	C	79	85	parallel
Strand 5	C	222	231	parallel
Strand 6	C	205	216	anti-parallel
Strand 7	C	126	138	anti-parallel
Strand 8	C	141	144	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	9	15	parallel
Strand 3	C	295	302	parallel
Strand 4	C	79	85	parallel
Strand 5	C	222	231	parallel
Strand 6	C	205	216	anti-parallel
Strand 7	C	126	138	anti-parallel
Strand 8	C	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	38	41	anti-parallel
Strand 3	C	44	47	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	9	15	parallel
Strand 3	D	295	302	parallel
Strand 4	D	79	85	parallel
Strand 5	D	222	231	parallel
Strand 6	D	205	216	anti-parallel
Strand 7	D	126	138	anti-parallel
Strand 8	D	141	144	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	9	15	parallel
Strand 3	D	295	302	parallel
Strand 4	D	79	85	parallel
Strand 5	D	222	231	parallel
Strand 6	D	205	216	anti-parallel
Strand 7	D	126	138	anti-parallel
Strand 8	D	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	38	41	anti-parallel
Strand 3	D	44	47	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	9	15	parallel
Strand 3	E	295	302	parallel
Strand 4	E	79	85	parallel
Strand 5	E	222	231	parallel
Strand 6	E	205	216	anti-parallel
Strand 7	E	126	138	anti-parallel
Strand 8	E	141	144	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	9	15	parallel
Strand 3	E	295	302	parallel
Strand 4	E	79	85	parallel
Strand 5	E	222	231	parallel
Strand 6	E	205	216	anti-parallel
Strand 7	E	126	138	anti-parallel
Strand 8	E	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	38	41	anti-parallel
Strand 3	E	44	47	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	157	first strand
Strand 2	E	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	193	first strand
Strand 2	E	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	52	first strand
Strand 2	K	9	15	parallel
Strand 3	K	295	302	parallel
Strand 4	K	79	84	parallel
Strand 5	K	222	232	parallel
Strand 6	K	205	216	anti-parallel
Strand 7	K	126	138	anti-parallel
Strand 8	K	141	144	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	52	first strand
Strand 2	K	9	15	parallel
Strand 3	K	295	302	parallel
Strand 4	K	79	84	parallel
Strand 5	K	222	232	parallel
Strand 6	K	205	216	anti-parallel
Strand 7	K	126	138	anti-parallel
Strand 8	K	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	33	first strand
Strand 2	K	38	41	anti-parallel
Strand 3	K	44	47	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	154	157	first strand
Strand 2	K	163	166	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LT2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LT2