Analysis of interatomic Contacts of Structural Units in PDB entry:
5LT6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LT6 entry

There are 2 chains in PDB entry 5LT6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1446GLY 1690
B
 PRO 1447LEU 1689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5LT6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1452 1455Right-handed 310
Helix 2
AA2
A
1456 1466Right-handed alpha
Helix 3
AA3
A
1505 1511Right-handed alpha
Helix 4
AA4
A
1520 1525Right-handed alpha
Helix 5
AA5
A
1535 1539Right-handed 310
Helix 6
AA6
A
1585 1600Right-handed alpha
Helix 7
AA7
A
1622 1627Right-handed 310
Helix 8
AA8
A
1665 1669Right-handed 310
Helix 9
AA9
B
1452 1455Right-handed 310
Helix 10
AB1
B
1456 1466Right-handed alpha
Helix 11
AB2
B
1505 1511Right-handed alpha
Helix 12
AB3
B
1520 1525Right-handed alpha
Helix 13
AB4
B
1535 1539Right-handed 310
Helix 14
AB5
B
1585 1597Right-handed alpha
Helix 15
AB6
B
1622 1627Right-handed 310
Helix 16
AB7
B
1665 1669Right-handed 310
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There are 9 sheets in PDB entry 5LT6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1448 1449first strand
Strand 2
A
1552 1556anti-parallel
Strand 3
A
1562 1566anti-parallel
Strand 4
A
1661 1664anti-parallel
Strand 5
A
1628 1629parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1474 1475first strand
Strand 2
A
1620 1621parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1480 1481first strand
Strand 2
A
1582 1584parallel
Strand 3
A
1613 1616anti-parallel
Strand 4
A
1605 1610anti-parallel
Strand 5
A
1670 1671anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1575 1578first strand
Strand 2
A
1645 1652anti-parallel
Strand 3
A
1635 1642anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1676 1677first strand
Strand 2
A
1688 1689anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1448 1449first strand
Strand 2
B
1552 1556anti-parallel
Strand 3
B
1562 1566anti-parallel
Strand 4
B
1661 1664anti-parallel
Strand 5
B
1628 1629parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1474 1475first strand
Strand 2
B
1620 1621parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1480 1481first strand
Strand 2
B
1582 1584parallel
Strand 3
B
1613 1616anti-parallel
Strand 4
B
1606 1610anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1575 1578first strand
Strand 2
B
1645 1652anti-parallel
Strand 3
B
1635 1642anti-parallel
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