Analysis of interatomic Contacts of Structural Units in PDB entry:
5LT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LT9 entry

There are 2 chains in PDB entry 5LT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 39THR 272
B
 GLU 40GLU 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5LT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 78Right-handed alpha
Helix 2
AA2
A
80 89Right-handed alpha
Helix 3
AA3
A
90 95Right-handed alpha
Helix 4
AA4
A
122 125Right-handed 310
Helix 5
AA5
A
126 136Right-handed alpha
Helix 6
AA6
A
176 184Right-handed alpha
Helix 7
AA7
A
215 220Right-handed alpha
Helix 8
AA8
A
264 268Right-handed alpha
Helix 9
AA9
B
41 75Right-handed alpha
Helix 10
AB1
B
80 89Right-handed alpha
Helix 11
AB2
B
90 97Right-handed alpha
Helix 12
AB3
B
122 125Right-handed 310
Helix 13
AB4
B
126 135Right-handed alpha
Helix 14
AB5
B
176 184Right-handed alpha
Helix 15
AB6
B
208 212Right-handed 310
Helix 16
AB7
B
215 220Right-handed alpha
Helix 17
AB8
B
268 274Right-handed alpha
Helix 18
AB9
B
282 291Right-handed alpha
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There are 6 sheets in PDB entry 5LT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
100 104anti-parallel
Strand 3
A
166 175anti-parallel
Strand 4
A
152 161anti-parallel
Strand 5
A
139 140anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
100 104anti-parallel
Strand 3
A
166 175anti-parallel
Strand 4
A
152 161anti-parallel
Strand 5
A
144 145anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
192 198anti-parallel
Strand 3
A
256 263anti-parallel
Strand 4
A
239 247anti-parallel
Strand 5
A
232 236anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
100 104anti-parallel
Strand 3
B
168 175anti-parallel
Strand 4
B
152 160anti-parallel
Strand 5
B
139 140anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
100 104anti-parallel
Strand 3
B
168 175anti-parallel
Strand 4
B
152 160anti-parallel
Strand 5
B
144 145anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
192 198anti-parallel
Strand 3
B
256 263anti-parallel
Strand 4
B
239 247anti-parallel
Strand 5
B
231 236anti-parallel
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