Analysis of interatomic Contacts of Structural Units in PDB entry:
5LTG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LTG entry

There are 2 chains in PDB entry 5LTG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 32	PHE 524
B	ASP 32	GLY 525

There are no helices in PDB entry 5LTG

There are 14 sheets in PDB entry 5LTG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	45	50	anti-parallel
Strand 3	A	53	58	anti-parallel
Strand 4	A	63	69	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	100	105	anti-parallel
Strand 4	A	110	116	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	126	first strand
Strand 2	A	130	135	anti-parallel
Strand 3	A	138	143	anti-parallel
Strand 4	A	149	154	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	173	177	anti-parallel
Strand 3	A	202	208	anti-parallel
Strand 4	A	213	221	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	230	first strand
Strand 2	A	236	241	anti-parallel
Strand 3	A	246	251	anti-parallel
Strand 4	A	257	262	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	275	first strand
Strand 2	A	281	286	anti-parallel
Strand 3	A	290	295	anti-parallel
Strand 4	A	441	444	anti-parallel
Strand 5	A	513	514	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	466	first strand
Strand 2	A	486	497	anti-parallel
Strand 3	A	501	507	anti-parallel
Strand 4	A	516	522	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	45	50	anti-parallel
Strand 3	B	53	58	anti-parallel
Strand 4	B	63	69	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	100	105	anti-parallel
Strand 4	B	110	116	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	126	first strand
Strand 2	B	130	135	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	149	154	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	173	177	anti-parallel
Strand 3	B	202	208	anti-parallel
Strand 4	B	213	221	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	230	first strand
Strand 2	B	236	241	anti-parallel
Strand 3	B	246	251	anti-parallel
Strand 4	B	257	262	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	275	first strand
Strand 2	B	281	286	anti-parallel
Strand 3	B	290	295	anti-parallel
Strand 4	B	441	444	anti-parallel
Strand 5	B	513	514	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	466	first strand
Strand 2	B	486	497	anti-parallel
Strand 3	B	501	507	anti-parallel
Strand 4	B	516	522	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LTG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LTG