Analysis of interatomic Contacts of Structural Units in PDB entry:
5LTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LTH entry

There is 1 chain in PDB entry 5LTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 5ALA 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5LTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 27Right-handed alpha
Helix 2
AA2
A
63 78Right-handed alpha
Helix 3
AA3
A
88 107Right-handed alpha
Helix 4
AA4
A
137 141Right-handed 310
Helix 5
AA5
A
144 151Right-handed alpha
Helix 6
AA6
A
181 186Right-handed alpha
Helix 7
AA7
A
189 194Right-handed alpha
Helix 8
AA8
A
204 215Right-handed alpha
Helix 9
AA9
A
238 240Right-handed 310
Helix 10
AB1
A
241 246Right-handed alpha
Helix 11
AB2
A
247 251Right-handed 310
Helix 12
AB3
A
256 260Right-handed alpha
Helix 13
AB4
A
290 294Right-handed alpha
Helix 14
AB5
A
296 310Right-handed alpha
Helix 15
AB6
A
311 319Right-handed alpha
Helix 16
AB7
A
320 322Right-handed 310
Helix 17
AB8
A
323 333Right-handed alpha
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There are 2 sheets in PDB entry 5LTH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
222 231anti-parallel
Strand 3
A
261 272anti-parallel
Strand 4
A
279 289anti-parallel
Strand 5
A
156 163anti-parallel
Strand 6
A
166 173anti-parallel
Strand 7
A
82 84anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
119 124anti-parallel
Strand 3
A
129 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il