Analysis of interatomic Contacts of Structural Units in PDB entry:
5LTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LTJ entry

There is 1 chain in PDB entry 5LTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 60SER 762
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5LTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 71Right-handed alpha
Helix 2
AA2
A
83 94Right-handed alpha
Helix 3
AA3
A
95 100Right-handed 310
Helix 4
AA4
A
101 112Right-handed alpha
Helix 5
AA5
A
124 138Right-handed alpha
Helix 6
AA6
A
139 141Right-handed 310
Helix 7
AA7
A
152 168Right-handed alpha
Helix 8
AA8
A
196 206Right-handed alpha
Helix 9
AA9
A
220 223Right-handed 310
Helix 10
AB1
A
224 241Right-handed alpha
Helix 11
AB2
A
254 262Right-handed alpha
Helix 12
AB3
A
288 304Right-handed alpha
Helix 13
AB4
A
315 338Right-handed alpha
Helix 14
AB5
A
352 357Right-handed alpha
Helix 15
AB6
A
358 361Right-handed 310
Helix 16
AB7
A
382 385Right-handed 310
Helix 17
AB8
A
422 431Right-handed alpha
Helix 18
AB9
A
446 454Right-handed alpha
Helix 19
AC1
A
460 465Right-handed 310
Helix 20
AC2
A
466 477Right-handed alpha
Helix 21
AC3
A
492 506Right-handed alpha
Helix 22
AC4
A
516 523Right-handed alpha
Helix 23
AC5
A
528 538Right-handed alpha
Helix 24
AC6
A
539 542Right-handed 310
Helix 25
AC7
A
543 555Right-handed alpha
Helix 26
AC8
A
566 576Right-handed alpha
Helix 27
AC9
A
582 600Right-handed alpha
Helix 28
AD1
A
603 612Right-handed alpha
Helix 29
AD2
A
614 635Right-handed alpha
Helix 30
AD3
A
648 657Right-handed alpha
Helix 31
AD4
A
657 662Right-handed alpha
Helix 32
AD5
A
720 728Right-handed alpha
Helix 33
AD6
A
740 762Right-handed alpha
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There are 4 sheets in PDB entry 5LTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
191 195parallel
Strand 4
A
145 150parallel
Strand 5
A
212 218parallel
Strand 6
A
245 250parallel
Strand 7
A
114 119parallel
Strand 8
A
267 270parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 281first strand
Strand 2
A
439 443parallel
Strand 3
A
393 398parallel
Strand 4
A
308 312parallel
Strand 5
A
375 380parallel
Strand 6
A
342 347parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 408first strand
Strand 2
A
413 420anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
665 668first strand
Strand 2
A
676 678anti-parallel
Strand 3
A
684 687anti-parallel
Strand 4
A
711 718parallel
Strand 5
A
699 707anti-parallel
Strand 6
A
665 668anti-parallel
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